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2VP2
Asym. Unit
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Asym.Unit (75 KB)
Biol.Unit 1 (70 KB)
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(1)
Title
:
STRUCTURAL STUDIES OF NUCLEOSIDE ANALOG AND FEEDBACK INHIBITOR BINDING TO DROSOPHILA MELANOGASTER MULTISUBSTRATE DEOXYRIBONUCLEOSIDE KINASE
Authors
:
N. E. Mikkelsen, B. Munch-Petersen, H. Eklund
Date
:
26 Feb 08 (Deposition) - 29 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Atp-Binding, Dna Synthesis, Phosphoprotein, Feedback Inhibition, Deoxyribonucleoside Kinase, Salvage Pathway, Nucleotide-Binding, Dttp, Kinase, Complex, Drosophila, Transferase
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Reference
:
N. E. Mikkelsen, B. Munch-Petersen, H. Eklund
Structural Studies Of Nucleoside Analog And Feedback Inhibitor Binding To Drosophila Melanogaster Multisubstrate Deoxyribonucleoside Kinase.
Febs J. V. 275 2151 2008
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTa)
1b: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTb)
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No.
Name
Count
Type
Full Name
1
DGT
2
Ligand/Ion
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:29 , GLY A:30 , SER A:31 , GLY A:32 , LYS A:33 , THR A:34 , VAL A:54 , TRP A:57 , LEU A:66 , MET A:69 , TYR A:70 , PHE A:80 , GLN A:81 , GLU A:104 , ARG A:105 , ALA A:110 , PHE A:114 , MET A:118 , ARG A:167 , ARG A:169 , GLU A:172 , HOH A:2052 , HOH A:2063 , HOH A:2064 , HOH A:2066
BINDING SITE FOR RESIDUE DGT A1210
2
AC2
SOFTWARE
ASN B:28 , ILE B:29 , GLY B:30 , SER B:31 , GLY B:32 , LYS B:33 , THR B:34 , VAL B:54 , TRP B:57 , TYR B:70 , PHE B:80 , GLN B:81 , VAL B:84 , GLU B:104 , ARG B:105 , ALA B:110 , PHE B:114 , ARG B:167 , ARG B:169 , GLU B:172 , HOH B:2040 , HOH B:2041
BINDING SITE FOR RESIDUE DGT B1209
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2vp2a_ (A:)
1b: SCOP_d2vp2b_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nucleotide and nucleoside kinases
(231)
Protein domain
:
Deoxyribonucleoside kinase
(11)
Fruit fly (Drosophila melanogaster) [TaxId: 7227]
(11)
1a
d2vp2a_
A:
1b
d2vp2b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2vp2A00 (A:12-209)
1b: CATH_2vp2B00 (B:12-208)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Fruit fly (Drosophila melanogaster)
(15)
1a
2vp2A00
A:12-209
1b
2vp2B00
B:12-208
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_dNK_2vp2B01 (B:80-208)
1b: PFAM_dNK_2vp2B02 (B:80-208)
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Clan
:
P-loop_NTPase
(1112)
Family
:
dNK
(33)
Drosophila melanogaster (Fruit fly)
(13)
1a
dNK-2vp2B01
B:80-208
1b
dNK-2vp2B02
B:80-208
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