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2VO1
Asym. Unit
Info
Asym.Unit (80 KB)
Biol.Unit 1 (145 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SYNTHETASE DOMAIN OF HUMAN CTP SYNTHETASE
Authors
:
P. Stenmark, P. Kursula, C. Arrowsmith, H. Berglund, A. Edwards, M. Ehn S. Flodin, S. Graslund, M. Hammarstrom, B. M. Hallberg, L. Holmberg-S T. Kotenyoa, M. Moche, P. Nilsson-Ehle, D. Ogg, C. Persson, J. Sagemar H. Schuler, M. Sundstrom, A. G. Thorsell, S. Van Den Berg, J. Weigelt P. Nordlund
Date
:
08 Feb 08 (Deposition) - 11 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Pyrimidine Biosynthesis, Glutamine Amidotransferase, Phosphorylation, Amidotransferase, Cytidine 5-Prime Triphosphate Synthetase, Ctp, Utp, Ctps, Ligase, Glutamine, Ctp Synthase, Phosphoprotein, Ctp Synthetase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Kursula, S. Flodin, M. Ehn, M. Hammarstrom, H. Schuler, P. Nordlund P. Stenmark
Structure Of The Synthetase Domain Of Human Ctp Synthetase, A Target For Anticancer Therapy.
Acta Crystallogr. , Sect. F V. 62 613 2006
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:13 , ILE A:14 , GLY A:15 , LYS A:16 , GLY A:17 , SO4 A:1275
BINDING SITE FOR RESIDUE SO4 A1273
2
AC2
SOFTWARE
LYS A:193 , THR A:194 , LYS A:195 , LYS A:229
BINDING SITE FOR RESIDUE SO4 A1274
3
AC3
SOFTWARE
SER A:12 , GLY A:13 , LYS A:16 , TYR A:42 , GLY A:148 , GLY A:149 , SO4 A:1273
BINDING SITE FOR RESIDUE SO4 A1275
4
AC4
SOFTWARE
GLY B:13 , ILE B:14 , GLY B:15 , LYS B:16 , GLY B:17
BINDING SITE FOR RESIDUE SO4 B1273
5
AC5
SOFTWARE
SER A:12 , LYS B:193 , THR B:194 , LYS B:195
BINDING SITE FOR RESIDUE SO4 B1274
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(7, 14)
Info
All Exons
Exon 1.5c (A:1-45 | B:1-46)
Exon 1.6b (A:85-113 | B:87-113)
Exon 1.7 (A:113-146 | B:113-146 (gaps))
Exon 1.8c (A:147-185 | B:147-185)
Exon 1.9 (A:186-213 (gaps) | B:186-213 (gaps...)
Exon 1.10c (A:214-240 | B:214-240)
Exon 1.11b (A:241-273 | B:241-273)
View:
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All Exon Boundaries
1: Boundary 1.1/1.5c
2: Boundary 1.5c/1.6b
3: Boundary 1.6b/1.7
4: Boundary 1.7/1.8c
5: Boundary 1.8c/1.9
6: Boundary 1.9/1.10c
7: Boundary 1.10c/1.11b
8: Boundary 1.11b/1.12b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000372621
1
ENSE00001458274
chr1:
41445007-41445501
495
PYRG1_HUMAN
-
0
0
-
-
1.5c
ENST00000372621
5c
ENSE00002144581
chr1:
41448950-41449128
179
PYRG1_HUMAN
1-56
56
2
A:1-45
B:1-46
45
46
1.6b
ENST00000372621
6b
ENSE00001123011
chr1:
41450493-41450663
171
PYRG1_HUMAN
56-113
58
2
A:85-113
B:87-113
29
27
1.7
ENST00000372621
7
ENSE00001190755
chr1:
41453044-41453144
101
PYRG1_HUMAN
113-146
34
2
A:113-146
B:113-146 (gaps)
34
34
1.8c
ENST00000372621
8c
ENSE00001190751
chr1:
41454266-41454382
117
PYRG1_HUMAN
147-185
39
2
A:147-185
B:147-185
39
39
1.9
ENST00000372621
9
ENSE00001190748
chr1:
41456837-41456920
84
PYRG1_HUMAN
186-213
28
2
A:186-213 (gaps)
B:186-213 (gaps)
28
28
1.10c
ENST00000372621
10c
ENSE00001190744
chr1:
41457437-41457517
81
PYRG1_HUMAN
214-240
27
2
A:214-240
B:214-240
27
27
1.11b
ENST00000372621
11b
ENSE00001190740
chr1:
41461589-41461740
152
PYRG1_HUMAN
241-291
51
2
A:241-273
B:241-273
33
33
1.12b
ENST00000372621
12b
ENSE00001226457
chr1:
41463066-41463198
133
PYRG1_HUMAN
291-335
45
0
-
-
1.13c
ENST00000372621
13c
ENSE00001190726
chr1:
41466701-41466789
89
PYRG1_HUMAN
336-365
30
0
-
-
1.15b
ENST00000372621
15b
ENSE00001190724
chr1:
41467832-41467926
95
PYRG1_HUMAN
365-397
33
0
-
-
1.16a
ENST00000372621
16a
ENSE00001190721
chr1:
41468786-41468848
63
PYRG1_HUMAN
397-418
22
0
-
-
1.18a
ENST00000372621
18a
ENSE00001190718
chr1:
41471723-41471766
44
PYRG1_HUMAN
418-432
15
0
-
-
1.19
ENST00000372621
19
ENSE00001123002
chr1:
41473121-41473217
97
PYRG1_HUMAN
433-465
33
0
-
-
1.20a
ENST00000372621
20a
ENSE00001122991
chr1:
41474331-41474386
56
PYRG1_HUMAN
465-483
19
0
-
-
1.20c
ENST00000372621
20c
ENSE00001122982
chr1:
41474466-41474562
97
PYRG1_HUMAN
484-516
33
0
-
-
1.21
ENST00000372621
21
ENSE00001122971
chr1:
41475117-41475261
145
PYRG1_HUMAN
516-564
49
0
-
-
1.22
ENST00000372621
22
ENSE00001190765
chr1:
41475833-41475926
94
PYRG1_HUMAN
564-591
28
0
-
-
1.23c
ENST00000372621
23c
ENSE00001458238
chr1:
41477330-41478235
906
PYRG1_HUMAN
-
0
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2vo1a1 (A:1-273)
1b: SCOP_d2vo1b_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nitrogenase iron protein-like
(152)
Protein domain
:
CTP synthase PyrG, N-terminal domain
(5)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2vo1a1
A:1-273
1b
d2vo1b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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