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2VNV
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (56 KB)
Biol.Unit 3 (55 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BCLA LECTIN FROM BURKHOLDERIA CENOCEPACIA IN COMPLEX WITH ALPHA-METHYL-MANNOSIDE AT 1.7 ANGSTROM RESOLUTION
Authors
:
E. Lameignere, L. Malinovska, E. P. Mitchell, A. Imberty, M. Wimmerova
Date
:
07 Feb 08 (Deposition) - 08 Apr 08 (Release) - 13 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E (2x)
Keywords
:
Sugar-Binding Protein, Protein Sugar Interaction, Sugar-Binding Protein Lectin, Burkholderia Cenocepacia
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Lameignere, L. Malinovska, M. Slavikova, E. Duchaud, E. P. Mitchell, A. Varrot, O. Sedo, A. Imberty, M. Wimmerova
Structural Basis For Mannose Recognition By A Lectin From Opportunistic Bacteria Burkholderia Cenocepacia
Biochem. J. V. 411 307 2008
[
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
2a: O1-METHYL-MANNOSE (MMAa)
2b: O1-METHYL-MANNOSE (MMAb)
2c: O1-METHYL-MANNOSE (MMAc)
2d: O1-METHYL-MANNOSE (MMAd)
2e: O1-METHYL-MANNOSE (MMAe)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
10
Ligand/Ion
CALCIUM ION
2
MMA
5
Ligand/Ion
O1-METHYL-MANNOSE
3
SO4
4
Ligand/Ion
SULFATE ION
[
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]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:28 , ALA A:29 , ALA A:30 , GLU A:31 , GLU A:109 , ASP A:110 , HIS A:112 , ASP A:113 , ASP A:115 , ASP A:118 , CA A:301 , CA A:302 , GLY B:128
BINDING SITE FOR RESIDUE MMA A 201
02
AC2
SOFTWARE
GLU A:109 , ASP A:113 , ASP A:115 , ASP A:118 , MMA A:201
BINDING SITE FOR RESIDUE CA A 301
03
AC3
SOFTWARE
ASN A:28 , ASP A:115 , ASN A:117 , ASP A:118 , MMA A:201 , GLY B:128
BINDING SITE FOR RESIDUE CA A 302
04
AC4
SOFTWARE
HIS A:49 , LYS A:50 , ARG A:58 , HIS E:34 , LYS E:50 , SO4 E:1129
BINDING SITE FOR RESIDUE SO4 A1129
05
AC5
SOFTWARE
GLY A:128 , ASN B:28 , ALA B:29 , ALA B:30 , GLU B:31 , GLU B:109 , ASP B:110 , HIS B:112 , ASP B:113 , ASP B:115 , ASP B:118 , CA B:301 , CA B:302
BINDING SITE FOR RESIDUE MMA B 201
06
AC6
SOFTWARE
GLU B:109 , ASP B:113 , ASP B:115 , ASP B:118 , MMA B:201
BINDING SITE FOR RESIDUE CA B 301
07
AC7
SOFTWARE
GLY A:128 , ASN B:28 , ASP B:115 , ASN B:117 , ASP B:118 , MMA B:201
BINDING SITE FOR RESIDUE CA B 302
08
AC8
SOFTWARE
HIS B:49 , LYS B:50 , ARG B:58 , HOH B:2146 , HOH B:2260
BINDING SITE FOR RESIDUE SO4 B1129
09
AC9
SOFTWARE
ASN C:28 , ALA C:29 , ALA C:30 , GLU C:31 , GLU C:109 , ASP C:110 , HIS C:112 , ASP C:113 , ASP C:115 , ASP C:118 , CA C:301 , CA C:302 , GLY D:128
BINDING SITE FOR RESIDUE MMA C 201
10
BC1
SOFTWARE
GLU C:109 , ASP C:113 , ASP C:115 , ASP C:118 , MMA C:201
BINDING SITE FOR RESIDUE CA C 301
11
BC2
SOFTWARE
ASN C:28 , ASP C:115 , ASN C:117 , ASP C:118 , MMA C:201 , GLY D:128
BINDING SITE FOR RESIDUE CA C 302
12
BC3
SOFTWARE
GLY C:128 , ASN D:28 , ALA D:29 , ALA D:30 , GLU D:31 , GLU D:109 , ASP D:110 , HIS D:112 , ASP D:113 , ASP D:115 , ASP D:118 , CA D:301 , CA D:302 , HOH D:2273
BINDING SITE FOR RESIDUE MMA D 201
13
BC4
SOFTWARE
GLU D:109 , ASP D:113 , ASP D:115 , ASP D:118 , MMA D:201
BINDING SITE FOR RESIDUE CA D 301
14
BC5
SOFTWARE
GLY C:128 , ASN D:28 , ASP D:115 , ASN D:117 , ASP D:118 , MMA D:201
BINDING SITE FOR RESIDUE CA D 302
15
BC6
SOFTWARE
HIS D:49 , LYS D:50 , ARG D:58 , HOH D:2146 , HOH D:2274
BINDING SITE FOR RESIDUE SO4 D1129
16
BC7
SOFTWARE
ASN E:28 , ALA E:29 , ALA E:30 , GLU E:31 , GLU E:109 , ASP E:110 , HIS E:112 , ASP E:113 , ASP E:115 , ASP E:118 , GLY E:128 , CA E:301 , CA E:302
BINDING SITE FOR RESIDUE MMA E 201
17
BC8
SOFTWARE
GLU E:109 , ASP E:113 , ASP E:115 , ASP E:118 , MMA E:201
BINDING SITE FOR RESIDUE CA E 301
18
BC9
SOFTWARE
ASN E:28 , ASP E:115 , ASN E:117 , ASP E:118 , GLY E:128 , MMA E:201
BINDING SITE FOR RESIDUE CA E 302
19
CC1
SOFTWARE
HIS A:49 , SO4 A:1129 , LYS E:36 , TYR E:48 , HOH E:2229
BINDING SITE FOR RESIDUE SO4 E1129
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d2vnva_ (A:)
1b: SCOP_d2vnvb_ (B:)
1c: SCOP_d2vnvc_ (C:)
1d: SCOP_d2vnvd_ (D:)
1e: SCOP_d2vnve_ (E:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Calcium-mediated lectin
(32)
Superfamily
:
Calcium-mediated lectin
(32)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Burkholderia cenocepacia [TaxId: 216591]
(5)
1a
d2vnva_
A:
1b
d2vnvb_
B:
1c
d2vnvc_
C:
1d
d2vnvd_
D:
1e
d2vnve_
E:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2vnvA00 (A:9-128)
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Classes
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Topologies
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Calcium-mediated lectin
(24)
Burkholderia cenocepacia. Organism_taxid: 216591. Strain: j2315.
(1)
1a
2vnvA00
A:9-128
[
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]
Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_PA_IIL_2vnvE01 (E:13-127)
1b: PFAM_PA_IIL_2vnvE02 (E:13-127)
1c: PFAM_PA_IIL_2vnvE03 (E:13-127)
1d: PFAM_PA_IIL_2vnvE04 (E:13-127)
1e: PFAM_PA_IIL_2vnvE05 (E:13-127)
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Clans
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)
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)
Clan
:
no clan defined [family: PA-IIL]
(21)
Family
:
PA-IIL
(21)
Burkholderia cenocepacia PC184
(1)
1a
PA-IIL-2vnvE01
E:13-127
1b
PA-IIL-2vnvE02
E:13-127
1c
PA-IIL-2vnvE03
E:13-127
1d
PA-IIL-2vnvE04
E:13-127
1e
PA-IIL-2vnvE05
E:13-127
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (138 KB)
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Header - Biol.Unit 1
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