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2VN5
Biol. Unit 2
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Asym.Unit (73 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (35 KB)
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(1)
Title
:
THE CLOSTRIDIUM CELLULOLYTICUM DOCKERIN DISPLAYS A DUAL BINDING MODE FOR ITS COHESIN PARTNER
Authors
:
B. A. Pinheiro, J. A. M. Prates, M. R. Proctor, H. J. Gilbert, G. J. Davies V. A. Money, C. Martinez-Fleites, E. A. Bayer, C. M. G. A. Fontes, H. P. F
Date
:
31 Jan 08 (Deposition) - 20 May 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Carbohydrate Metabolism, Polysaccharide Degradation, Cohesin, Dockerin, Hydrolase, Cellulosome, Glycosidase, Cellulose Degradation, Cell Adhesion
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Gene Ontology, PubMed, Web (Google)
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Reference
:
B. A. Pinheiro, M. R. Proctor, C. Martinez-Fleites, J. A. M. Prates, V. A. Money, G. J. Davies, E. A. Bayer, C. M. G. A. Fontes, H. P. Fierobe, H. J. Gilbert
The Clostridium Cellulolyticum Dockerin Displays A Dual Binding Mode For Its Cohesin Partner.
J. Biol. Chem. V. 283 18422 2008
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Hetero Components
(0, 0)
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All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
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Sites
(2, 2)
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1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ASP D:38 , ASN D:40 , ASP D:42 , GLU D:44 , ASP D:49 , HOH D:1025
BINDING SITE FOR RESIDUE CA D 101
2
AC4
SOFTWARE
ASP D:7 , ASN D:9 , ASP D:11 , ASN D:13 , ASP D:18 , HOH D:1010
BINDING SITE FOR RESIDUE CA D 102
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 3)
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1: CLOS_CELLULOSOME_RPT (D:38-57)
2: EF_HAND_1 (D:7-19)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CLOS_CELLULOSOME_RPT
PS00448
Clostridium cellulosome enzymes repeated domain signature.
GUNA_CLOCE
415-434
446-465
2
-
D:7-26
-
D:38-57
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
GUNA_CLOCE
415-427
1
-
D:7-19
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Exons
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2vn5b_ (B:)
1b: SCOP_d2vn5d_ (D:)
2a: SCOP_d2vn5a_ (A:)
2b: SCOP_d2vn5c_ (C:)
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Class
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All alpha proteins
(14657)
Fold
:
Type I dockerin domain
(11)
Superfamily
:
Type I dockerin domain
(11)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Clostridium cellulolyticum [TaxId: 1521]
(2)
1a
d2vn5b_
B:
1b
d2vn5d_
D:
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Carbohydrate-binding domain
(66)
Family
:
Cellulose-binding domain family III
(37)
Protein domain
:
Cohesin domain
(6)
Clostridium cellulolyticum [TaxId: 1521]
(2)
2a
d2vn5a_
A:
2b
d2vn5c_
C:
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Dockerin_1_2vn5D01 (D:38-58)
1b: PFAM_Dockerin_1_2vn5D02 (D:38-58)
1c: PFAM_Dockerin_1_2vn5D03 (D:38-58)
1d: PFAM_Dockerin_1_2vn5D04 (D:38-58)
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Clan
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EF_hand
(270)
Family
:
Dockerin_1
(3)
Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)
(2)
1a
Dockerin_1-2vn5D01
D:38-58
1b
Dockerin_1-2vn5D02
D:38-58
1c
Dockerin_1-2vn5D03
D:38-58
1d
Dockerin_1-2vn5D04
D:38-58
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Asymmetric Unit 1
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Asym.Unit (73 KB)
Header - Asym.Unit
Biol.Unit 1 (34 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
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