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Asym. Unit
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Asym.Unit (299 KB)
Biol.Unit 1 (288 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI RNASE E APOPROTEIN - CATALYTIC DOMAIN
Authors
:
D. J. Koslover, A. J. Callaghan, M. J. Marcaida, M. Martick, W. G. Scott, B. F. Luisi
Date
:
28 Jan 08 (Deposition) - 22 Jul 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Nuclease, Hydrolase, Cytoplasm, Rna-Binding, Rna Turnover, Endonuclease, Rna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Koslover, A. J. Callaghan, M. J. Marcaida, E. F. Garman, M. Martick, W. G. Scott, B. F. Luisi
The Crystal Structure Of The Escherichia Coli Rnase E Apoprotein And A Mechanism For Rna Degradation.
Structure V. 16 1238 2008
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
SO4
3
Ligand/Ion
SULFATE ION
2
ZN
2
Ligand/Ion
ZINC ION
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Sites
(5, 5)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:404 , CYS A:407 , CYS B:404 , CYS B:407
BINDING SITE FOR RESIDUE ZN B1514
2
AC2
SOFTWARE
CYS C:404 , CYS C:407 , CYS D:404 , CYS D:407
BINDING SITE FOR RESIDUE ZN D1516
3
AC3
SOFTWARE
SER A:140 , ARG A:169 , THR A:170
BINDING SITE FOR RESIDUE SO4 A1509
4
AC4
SOFTWARE
THR B:170
BINDING SITE FOR RESIDUE SO4 B1515
5
AC5
SOFTWARE
ARG C:169 , THR C:170 , ALA C:171
BINDING SITE FOR RESIDUE SO4 C1507
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 4)
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All PROSITE Patterns/Profiles
1: S1 (A:39-119,B:39-119,C:39-119,D:39-11...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
S1
PS50126
S1 domain profile.
RNE_ECOLI
39-119
4
A:39-119
B:39-119
C:39-119
D:39-119
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_S1_2vmkD01 (D:36-119)
1b: PFAM_S1_2vmkD02 (D:36-119)
1c: PFAM_S1_2vmkD03 (D:36-119)
1d: PFAM_S1_2vmkD04 (D:36-119)
2a: PFAM_RNase_E_G_2vmkD05 (D:121-393)
2b: PFAM_RNase_E_G_2vmkD06 (D:121-393)
2c: PFAM_RNase_E_G_2vmkD07 (D:121-393)
2d: PFAM_RNase_E_G_2vmkD08 (D:121-393)
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Clans
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(
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)
(
)
Organisms
(
)
(
)
Clan
:
OB
(224)
Family
:
S1
(23)
Escherichia coli (strain K12)
(5)
1a
S1-2vmkD01
D:36-119
1b
S1-2vmkD02
D:36-119
1c
S1-2vmkD03
D:36-119
1d
S1-2vmkD04
D:36-119
Clan
:
no clan defined [family: RNase_E_G]
(3)
Family
:
RNase_E_G
(3)
Escherichia coli (strain K12)
(3)
2a
RNase_E_G-2vmkD05
D:121-393
2b
RNase_E_G-2vmkD06
D:121-393
2c
RNase_E_G-2vmkD07
D:121-393
2d
RNase_E_G-2vmkD08
D:121-393
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