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2VM6
Asym. Unit
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Asym.Unit (35 KB)
Biol.Unit 1 (30 KB)
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(1)
Title
:
HUMAN BCL2-A1 IN COMPLEX WITH BIM-BH3 PEPTIDE
Authors
:
M. D. Herman, L. Lehtio, C. H. Arrowsmith, H. Berglund, R. D. Busam, R. Co L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Ham I. Johansson, A. Kallas, T. Karlberg, T. Kotenyova, M. Moche, M. E. Nil T. Nyman, C. Persson, J. Sagemark, L. Svensson, A. G. Thorsell, L. Tres S. Van Den Berg, J. Weigelt, M. Welin, P. Nordlund, Structural Geno Consortium (Sgc)
Date
:
23 Jan 08 (Deposition) - 05 Feb 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
B-Cell Lymphoma2, Antiapoptotic, Immune System, Bim, Bfl-1, Bcl2A1, Bcl-2A1, Membrane, Apoptosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Herman, T. Nyman, M. Welin, L. Lehtio, S. Flodin, L. Tresaugues, T. Kotenyova, A. Flores, P. Nordlund
Completing The Family Portrait Of The Anti- Apoptotic Bcl-2 Proteins: Crystal Structure Of Human Bfl-1 In Complex With Bim.
Febs Lett. V. 582 3590 2008
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
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Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:147 , ALA B:164 , ARG B:165
BINDING SITE FOR RESIDUE SO4 A1150
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020342 (C19Y, chain A, )
2: VAR_020343 (N39K, chain A, )
3: VAR_020344 (G82D, chain A, )
4: VAR_044059 (E117D, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020342
C
19
Y
B2LA1_HUMAN
Polymorphism
1138357
A
C
19
Y
2
UniProt
VAR_020343
N
39
K
B2LA1_HUMAN
Polymorphism
1138358
A
N
39
K
3
UniProt
VAR_020344
G
82
D
B2LA1_HUMAN
Polymorphism
3826007
A
G
82
D
4
UniProt
VAR_044059
E
117
D
B2LA1_HUMAN
Polymorphism
34080999
A
E
117
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: BCL2_FAMILY (A:37-142)
2: BH1 (A:78-97)
3: BH2 (A:133-144)
;
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
B2LA1_HUMAN
37-142
1
A:37-142
2
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
B2LA1_HUMAN
78-97
1
A:78-97
3
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
B2LA1_HUMAN
133-144
1
A:133-144
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Exons
(3, 3)
Info
All Exons
Exon 1.1a (A:1-140 (gaps))
Exon 1.3b (A:141-149)
Exon 2.10b (B:141-165)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3b
3: Boundary 1.3b/-
4: Boundary 2.4d/2.10b
5: Boundary 2.10b/2.14f
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000267953
1a
ENSE00001104195
chr15:
80263788-80263042
747
B2LA1_HUMAN
1-140
140
1
A:1-140 (gaps)
140
1.3b
ENST00000267953
3b
ENSE00001832143
chr15:
80253516-80253231
286
B2LA1_HUMAN
141-175
35
1
A:141-149
9
2.2b
ENST00000393256
2b
ENSE00001830376
chr2:
111878506-111878765
260
B2L11_HUMAN
-
0
0
-
-
2.4d
ENST00000393256
4d
ENSE00001008808
chr2:
111881310-111881716
407
B2L11_HUMAN
1-132
132
0
-
-
2.10b
ENST00000393256
10b
ENSE00001756661
chr2:
111907621-111907724
104
B2L11_HUMAN
132-166
35
1
B:141-165
25
2.14f
ENST00000393256
14f
ENSE00001924953
chr2:
111921710-111924587
2878
B2L11_HUMAN
167-198
32
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2vm6a_ (A:)
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(
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Folds
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(
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)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Bcl-2 inhibitors of programmed cell death
(113)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d2vm6a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Bcl_2_2vm6A01 (A:37-140)
2a: PFAM_Bclx_interact_2vm6B01 (B:141-165)
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Clans
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)
Clan
:
no clan defined [family: Bcl-2]
(60)
Family
:
Bcl-2
(60)
Homo sapiens (Human)
(44)
1a
Bcl-2-2vm6A01
A:37-140
Clan
:
no clan defined [family: Bclx_interact]
(9)
Family
:
Bclx_interact
(9)
Homo sapiens (Human)
(8)
2a
Bclx_interact-2vm6B01
B:141-165
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