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Biol. Unit 2
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Asym.Unit (179 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (86 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NATURAL CINNAMOMIN (ISOFORM III)
Authors
:
A. Azzi, T. Wang, D. -W. Zhu, Y. -S. Zou, W. -Y. Liu, S. -X. Lin
Date
:
11 Jan 08 (Deposition) - 10 Feb 09 (Release) - 10 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ribosome Inhibiting Proteins, Toxin, Hydrolase, Cinnamomin, Plant Defense, N-Glycosidase, Protein Synthesis Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Azzi, T. Wang, D. -W. Zhu, Y. -S. Zou, W. -Y. Liu, S. -X. Lin
Crystal Structure Of Native Cinnamomin Isoform Iii And Its Comparison With Other Ribosome Inactivating Proteins.
Proteins: Struct. , Funct. , V. 74 250 2009 Bioinf.
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 2-(ACETYLAMINO)-4-O-[2-(ACETYLAMIN... (AS5a)
1b: 2-(ACETYLAMINO)-4-O-[2-(ACETYLAMIN... (AS5b)
1c: 2-(ACETYLAMINO)-4-O-[2-(ACETYLAMIN... (AS5c)
1d: 2-(ACETYLAMINO)-4-O-[2-(ACETYLAMIN... (AS5d)
1e: 2-(ACETYLAMINO)-4-O-[2-(ACETYLAMIN... (AS5e)
1f: 2-(ACETYLAMINO)-4-O-[2-(ACETYLAMIN... (AS5f)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: BETA-D-XYLOPYRANOSE (XYPa)
4a: XYLOPYRANOSE (XYSa)
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No.
Name
Count
Type
Full Name
1
AS5
3
Ligand/Ion
2-(ACETYLAMINO)-4-O-[2-(ACETYLAMINO)-2-DEOXY-ALPHA-L-GULOPYRANOSYL]-1,5-ANHYDRO-2-DEOXY-D-MANNITOL
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
XYP
-1
Ligand/Ion
BETA-D-XYLOPYRANOSE
4
XYS
1
Ligand/Ion
XYLOPYRANOSE
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Sites
(6, 6)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC1 (SOFTWARE)
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Residues
Description
1
AC4
SOFTWARE
THR B:295 , THR B:335 , AS5 B:1550
BINDING SITE FOR RESIDUE BMA B1549
2
AC5
SOFTWARE
PRO B:220 , ASN B:285 , THR B:295 , SER B:328 , LEU B:333 , ASN B:420 , BMA B:1549 , XYS B:1553
BINDING SITE FOR RESIDUE AS5 B1550
3
AC6
SOFTWARE
ASN B:10 , HOH B:2050
BINDING SITE FOR RESIDUE AS5 B1551
4
AC7
SOFTWARE
ASN A:398 , GLN B:213 , TRP B:378 , ALA B:379 , ASN B:380 , TYR B:410 , HOH B:2051
BINDING SITE FOR RESIDUE AS5 B1552
5
AC9
SOFTWARE
AS5 A:1549 , BMA A:1552 , SER B:83
BINDING SITE FOR RESIDUE XYP A1553
6
BC1
SOFTWARE
SER B:227 , AS5 B:1550
BINDING SITE FOR RESIDUE XYS B1553
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Ricin_B_lectin_2vlcB01 (B:423-544)
1b: PFAM_Ricin_B_lectin_2vlcB02 (B:423-544)
1c: PFAM_Ricin_B_lectin_2vlcB03 (B:423-544)
1d: PFAM_Ricin_B_lectin_2vlcB04 (B:423-544)
2a: PFAM_RIP_2vlcB05 (B:5-211)
2b: PFAM_RIP_2vlcB06 (B:5-211)
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Clans
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(
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(
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Organisms
(
)
(
)
Clan
:
Trefoil
(131)
Family
:
Ricin_B_lectin
(25)
Cinnamomum camphora (Camphor tree) (Laurus camphora)
(1)
1a
Ricin_B_lectin-2vlcB01
B:423-544
1b
Ricin_B_lectin-2vlcB02
B:423-544
1c
Ricin_B_lectin-2vlcB03
B:423-544
1d
Ricin_B_lectin-2vlcB04
B:423-544
Clan
:
no clan defined [family: RIP]
(62)
Family
:
RIP
(62)
Cinnamomum camphora (Camphor tree) (Laurus camphora)
(1)
2a
RIP-2vlcB05
B:5-211
2b
RIP-2vlcB06
B:5-211
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Chain B
Asymmetric Unit 1
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Asym.Unit (179 KB)
Header - Asym.Unit
Biol.Unit 1 (88 KB)
Header - Biol.Unit 1
Biol.Unit 2 (86 KB)
Header - Biol.Unit 2
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