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2VL3
Biol. Unit 1
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Asym.Unit (83 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
OXIDIZED AND REDUCED FORMS OF HUMAN PEROXIREDOXIN 5
Authors
:
A. Smeets, J. P. Declercq
Date
:
08 Jan 08 (Deposition) - 26 Aug 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.83
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Thioredoxin Peroxidase, Alternative Initiation, Antioxidant Enzyme, Redox-Active Center, Cytoplasm, Peroxidase, Peroxisome, Antioxidant, Polymorphism, Mitochondrion, Peroxiredoxin, Oxidoreductase, Transit Peptide, Thioredoxin Fold
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Reference
:
A. Smeets, C. Marchand, D. Linard, B. Knoops, J. P. Declercq
The Crystal Structures Of Oxidized Forms Of Human Peroxiredoxin 5 With An Intramolecular Disulfide Bond Confirm The Proposed Enzymatic Mechanism For Atypical 2-Cys Peroxiredoxins.
Arch. Biochem. Biophys. V. 477 98 2008
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_036406 (F104L, chain A, )
2: VAR_PRDX5_HUMAN_CCDS8069_1_01 (F104L, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036406
F
157
L
PRDX5_HUMAN
Unclassified
---
A
F
104
L
2
CancerSNP
VAR_PRDX5_HUMAN_CCDS8069_1_01
*
F
157
L
PRDX5_HUMAN
Disease (Breast cancer)
---
A
F
104
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:3-161)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
PRDX5_HUMAN
56-214
2
A:3-161
-
-
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Exons
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2vl3a_ (A:)
1b: SCOP_d2vl3b_ (B:)
1c: SCOP_d2vl3c_ (C:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
automated matches
(46)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d2vl3a_
A:
1b
d2vl3b_
B:
1c
d2vl3c_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2vl3B00 (B:1-161)
1b: CATH_2vl3C00 (C:1-161)
1c: CATH_2vl3A00 (A:0-161)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
2vl3B00
B:1-161
1b
2vl3C00
C:1-161
1c
2vl3A00
A:0-161
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Redoxin_2vl3C01 (C:4-155)
1b: PFAM_Redoxin_2vl3C02 (C:4-155)
1c: PFAM_Redoxin_2vl3C03 (C:4-155)
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Clans
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Clan
:
Thioredoxin
(367)
Family
:
Redoxin
(27)
Homo sapiens (Human)
(6)
1a
Redoxin-2vl3C01
C:4-155
1b
Redoxin-2vl3C02
C:4-155
1c
Redoxin-2vl3C03
C:4-155
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Asym.Unit (83 KB)
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