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Asym. Unit
Info
Asym.Unit (195 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (66 KB)
Biol.Unit 3 (66 KB)
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(1)
Title
:
HUMAN NCAM, FN3 DOMAINS 1 AND 2, M610R MUTANT
Authors
:
F. Carafoli, J. L. Saffell, E. Hohenester
Date
:
04 Jan 08 (Deposition) - 26 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Adhesion Receptor, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Carafoli, J. L. Saffell, E. Hohenester
Structure Of The Tandem Fibronectin Type 3 Domains Of Neural Cell Adhesion Molecule
J. Mol. Biol. V. 377 524 2008
[
close entry info
]
Hetero Components
(1, 11)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
11
Ligand/Ion
SULFATE ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:546 , SER A:547 , LYS A:646 , ASP A:664
BINDING SITE FOR RESIDUE SO4 A1696
02
AC2
SOFTWARE
ALA C:539 , HIS C:546 , LYS C:567 , TYR C:572
BINDING SITE FOR RESIDUE SO4 C1696
03
AC3
SOFTWARE
ARG C:639 , LEU C:641 , SER C:642 , GLU E:569 , THR E:571
BINDING SITE FOR RESIDUE SO4 C1697
04
AC4
SOFTWARE
GLU D:569 , THR D:570 , THR D:571 , LYS D:594 , ARG F:639 , LEU F:641 , SER F:642
BINDING SITE FOR RESIDUE SO4 F1696
05
AC5
SOFTWARE
ALA F:692 , ALA F:693
BINDING SITE FOR RESIDUE SO4 F1697
06
AC6
SOFTWARE
ALA A:692 , ALA A:693
BINDING SITE FOR RESIDUE SO4 A1697
07
AC7
SOFTWARE
ARG D:650 , ARG F:538 , ALA F:539 , GLU F:542 , HIS F:546 , TYR F:572
BINDING SITE FOR RESIDUE SO4 F1698
08
AC8
SOFTWARE
ARG A:538 , ASN E:666 , ARG E:690
BINDING SITE FOR RESIDUE SO4 E1695
09
AC9
SOFTWARE
ALA D:692 , ALA D:693
BINDING SITE FOR RESIDUE SO4 D1696
10
BC1
SOFTWARE
PRO B:652 , SER F:643 , LYS F:646
BINDING SITE FOR RESIDUE SO4 F1699
11
BC2
SOFTWARE
ARG F:632 , HIS F:633 , ARG F:650
BINDING SITE FOR RESIDUE SO4 F1700
[
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SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049961 (E668D, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049961
E
679
D
NCAM1_HUMAN
Polymorphism
17115280
A/B/C/D/E/F
E
668
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: FN3 (A:499-598,B:499-598,C:499-598,D:49...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
NCAM1_HUMAN
509-608
611-706
12
A:499-598
B:499-598
C:499-598
D:499-598
E:499-598
F:499-598
A:600-693
B:600-693
C:600-693
D:600-693
E:600-693
F:600-693
[
close PROSITE info
]
Exons
(5, 30)
Info
All Exons
Exon 1.18b (A:497-497 | B:497-497 | C:497-497 ...)
Exon 1.19b (A:497-554 | B:497-554 | C:497-554 ...)
Exon 1.20b (A:554-599 | B:554-599 | C:554-599 ...)
Exon 1.28c (A:599-639 (gaps) | B:599-639 (gaps...)
Exon 1.29e (A:640-695 | B:640-694 | C:640-695 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.17b/1.18b
2: Boundary 1.18b/1.19b
3: Boundary 1.19b/1.20b
4: Boundary 1.20b/1.28c
5: Boundary 1.28c/1.29e
6: Boundary 1.29e/1.31c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.6
ENST00000316851
6
ENSE00001530989
chr11:
113067915-113067938
24
NCAM1_HUMAN
1-8
8
0
-
-
1.7a
ENST00000316851
7a
ENSE00001530988
chr11:
113073076-113073175
100
NCAM1_HUMAN
9-42
34
0
-
-
1.8a
ENST00000316851
8a
ENSE00001660707
chr11:
113075008-113075226
219
NCAM1_HUMAN
42-115
74
0
-
-
1.9b
ENST00000316851
9b
ENSE00001659816
chr11:
113076245-113076388
144
NCAM1_HUMAN
115-163
49
0
-
-
1.10
ENST00000316851
10
ENSE00001338262
chr11:
113076765-113076902
138
NCAM1_HUMAN
163-209
47
0
-
-
1.11
ENST00000316851
11
ENSE00001338259
chr11:
113077983-113078100
118
NCAM1_HUMAN
209-248
40
0
-
-
1.12
ENST00000316851
12
ENSE00001338256
chr11:
113078555-113078724
170
NCAM1_HUMAN
248-305
58
0
-
-
1.13
ENST00000316851
13
ENSE00000989824
chr11:
113085091-113085233
143
NCAM1_HUMAN
305-352
48
0
-
-
1.14a
ENST00000316851
14a
ENSE00002168218
chr11:
113092018-113092047
30
NCAM1_HUMAN
353-362
10
0
-
-
1.16b
ENST00000316851
16b
ENSE00001725196
chr11:
113102367-113102517
151
NCAM1_HUMAN
363-413
51
0
-
-
1.17b
ENST00000316851
17b
ENSE00001701392
chr11:
113102892-113103076
185
NCAM1_HUMAN
413-474
62
0
-
-
1.18b
ENST00000316851
18b
ENSE00001742465
chr11:
113103440-113103536
97
NCAM1_HUMAN
475-507
33
6
A:497-497
B:497-497
C:497-497
D:497-497
E:492-497 (gaps)
F:497-497
1
1
1
1
31
1
1.19b
ENST00000316851
19b
ENSE00001680751
chr11:
113103869-113104039
171
NCAM1_HUMAN
507-564
58
6
A:497-554
B:497-554
C:497-554
D:497-554
E:497-554
F:497-554
58
58
58
58
58
58
1.20b
ENST00000316851
20b
ENSE00001127020
chr11:
113105755-113105890
136
NCAM1_HUMAN
564-609
46
6
A:554-599
B:554-599
C:554-599
D:554-599
E:554-599
F:554-599
46
46
46
46
46
46
1.28c
ENST00000316851
28c
ENSE00001127014
chr11:
113126600-113126723
124
NCAM1_HUMAN
609-650
42
6
A:599-639 (gaps)
B:599-639 (gaps)
C:599-639 (gaps)
D:599-639 (gaps)
E:599-639 (gaps)
F:599-639 (gaps)
42
42
42
42
42
42
1.29e
ENST00000316851
29e
ENSE00001795910
chr11:
113130868-113131045
178
NCAM1_HUMAN
651-710
60
6
A:640-695
B:640-694
C:640-695
D:640-695
E:640-694
F:640-695
56
55
56
56
55
56
1.31c
ENST00000316851
31c
ENSE00001723448
chr11:
113140910-113141117
208
NCAM1_HUMAN
710-779
70
0
-
-
1.32
ENST00000316851
32
ENSE00001694365
chr11:
113142482-113142598
117
NCAM1_HUMAN
779-818
40
0
-
-
1.34h
ENST00000316851
34h
ENSE00001382162
chr11:
113145989-113149133
3145
NCAM1_HUMAN
818-857
40
0
-
-
[
close EXON info
]
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2vkxa1 (A:498-598)
1b: SCOP_d2vkxb1 (B:498-598)
1c: SCOP_d2vkxb2 (B:601-693)
1d: SCOP_d2vkxc1 (C:498-598)
1e: SCOP_d2vkxc2 (C:601-693)
1f: SCOP_d2vkxd1 (D:498-598)
1g: SCOP_d2vkxd2 (D:601-693)
1h: SCOP_d2vkxe1 (E:498-598)
1i: SCOP_d2vkxe2 (E:601-693)
1j: SCOP_d2vkxf1 (F:498-598)
1k: SCOP_d2vkxf2 (F:601-693)
1l: SCOP_d2vkxa2 (A:601-693)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Neural cell adhesion molecule 1, NCAM
(5)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2vkxa1
A:498-598
1b
d2vkxb1
B:498-598
1c
d2vkxb2
B:601-693
1d
d2vkxc1
C:498-598
1e
d2vkxc2
C:601-693
1f
d2vkxd1
D:498-598
1g
d2vkxd2
D:601-693
1h
d2vkxe1
E:498-598
1i
d2vkxe2
E:601-693
1j
d2vkxf1
F:498-598
1k
d2vkxf2
F:601-693
1l
d2vkxa2
A:601-693
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_fn3_2vkxF01 (F:600-685)
1b: PFAM_fn3_2vkxF02 (F:600-685)
1c: PFAM_fn3_2vkxF03 (F:600-685)
1d: PFAM_fn3_2vkxF04 (F:600-685)
1e: PFAM_fn3_2vkxF05 (F:600-685)
1f: PFAM_fn3_2vkxF06 (F:600-685)
1g: PFAM_fn3_2vkxF07 (F:600-685)
1h: PFAM_fn3_2vkxF08 (F:600-685)
1i: PFAM_fn3_2vkxF09 (F:600-685)
1j: PFAM_fn3_2vkxF10 (F:600-685)
1k: PFAM_fn3_2vkxF11 (F:600-685)
1l: PFAM_fn3_2vkxF12 (F:600-685)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
fn3
(66)
Homo sapiens (Human)
(52)
1a
fn3-2vkxF01
F:600-685
1b
fn3-2vkxF02
F:600-685
1c
fn3-2vkxF03
F:600-685
1d
fn3-2vkxF04
F:600-685
1e
fn3-2vkxF05
F:600-685
1f
fn3-2vkxF06
F:600-685
1g
fn3-2vkxF07
F:600-685
1h
fn3-2vkxF08
F:600-685
1i
fn3-2vkxF09
F:600-685
1j
fn3-2vkxF10
F:600-685
1k
fn3-2vkxF11
F:600-685
1l
fn3-2vkxF12
F:600-685
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Asym.Unit (195 KB)
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Header - Biol.Unit 1
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