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Biol. Unit 1
Info
Asym.Unit (195 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (66 KB)
Biol.Unit 3 (66 KB)
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(1)
Title
:
HUMAN NCAM, FN3 DOMAINS 1 AND 2, M610R MUTANT
Authors
:
F. Carafoli, J. L. Saffell, E. Hohenester
Date
:
04 Jan 08 (Deposition) - 26 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Adhesion Receptor, Cell Adhesion
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
F. Carafoli, J. L. Saffell, E. Hohenester
Structure Of The Tandem Fibronectin Type 3 Domains Of Neural Cell Adhesion Molecule
J. Mol. Biol. V. 377 524 2008
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
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Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC8 (SOFTWARE)
4: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:546 , SER A:547 , LYS A:646 , ASP A:664
BINDING SITE FOR RESIDUE SO4 A1696
2
AC6
SOFTWARE
ALA A:692 , ALA A:693
BINDING SITE FOR RESIDUE SO4 A1697
3
AC8
SOFTWARE
ARG A:538 , ASN E:666 , ARG E:690
BINDING SITE FOR RESIDUE SO4 E1695
4
BC1
SOFTWARE
PRO B:652 , SER F:643 , LYS F:646
BINDING SITE FOR RESIDUE SO4 F1699
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_049961 (E668D, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049961
E
679
D
NCAM1_HUMAN
Polymorphism
17115280
A/B
E
668
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: FN3 (A:499-598,B:499-598,A:600-693,B:60...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
NCAM1_HUMAN
509-608
611-706
4
A:499-598
B:499-598
-
-
-
-
A:600-693
B:600-693
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2vkxa1 (A:498-598)
1b: SCOP_d2vkxb1 (B:498-598)
1c: SCOP_d2vkxb2 (B:601-693)
1d: SCOP_d2vkxc1 (C:498-598)
1e: SCOP_d2vkxc2 (C:601-693)
1f: SCOP_d2vkxd1 (D:498-598)
1g: SCOP_d2vkxd2 (D:601-693)
1h: SCOP_d2vkxe1 (E:498-598)
1i: SCOP_d2vkxe2 (E:601-693)
1j: SCOP_d2vkxf1 (F:498-598)
1k: SCOP_d2vkxf2 (F:601-693)
1l: SCOP_d2vkxa2 (A:601-693)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Neural cell adhesion molecule 1, NCAM
(5)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2vkxa1
A:498-598
1b
d2vkxb1
B:498-598
1c
d2vkxb2
B:601-693
1d
d2vkxc1
C:498-598
1e
d2vkxc2
C:601-693
1f
d2vkxd1
D:498-598
1g
d2vkxd2
D:601-693
1h
d2vkxe1
E:498-598
1i
d2vkxe2
E:601-693
1j
d2vkxf1
F:498-598
1k
d2vkxf2
F:601-693
1l
d2vkxa2
A:601-693
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_fn3_2vkxF01 (F:600-685)
1b: PFAM_fn3_2vkxF02 (F:600-685)
1c: PFAM_fn3_2vkxF03 (F:600-685)
1d: PFAM_fn3_2vkxF04 (F:600-685)
1e: PFAM_fn3_2vkxF05 (F:600-685)
1f: PFAM_fn3_2vkxF06 (F:600-685)
1g: PFAM_fn3_2vkxF07 (F:600-685)
1h: PFAM_fn3_2vkxF08 (F:600-685)
1i: PFAM_fn3_2vkxF09 (F:600-685)
1j: PFAM_fn3_2vkxF10 (F:600-685)
1k: PFAM_fn3_2vkxF11 (F:600-685)
1l: PFAM_fn3_2vkxF12 (F:600-685)
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Clan
:
E-set
(290)
Family
:
fn3
(66)
Homo sapiens (Human)
(52)
1a
fn3-2vkxF01
F:600-685
1b
fn3-2vkxF02
F:600-685
1c
fn3-2vkxF03
F:600-685
1d
fn3-2vkxF04
F:600-685
1e
fn3-2vkxF05
F:600-685
1f
fn3-2vkxF06
F:600-685
1g
fn3-2vkxF07
F:600-685
1h
fn3-2vkxF08
F:600-685
1i
fn3-2vkxF09
F:600-685
1j
fn3-2vkxF10
F:600-685
1k
fn3-2vkxF11
F:600-685
1l
fn3-2vkxF12
F:600-685
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Show PDB file:
Asym.Unit (195 KB)
Header - Asym.Unit
Biol.Unit 1 (65 KB)
Header - Biol.Unit 1
Biol.Unit 2 (66 KB)
Header - Biol.Unit 2
Biol.Unit 3 (66 KB)
Header - Biol.Unit 3
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