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Asym. Unit
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Asym.Unit (45 KB)
Biol.Unit 1 (74 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BTB DOMAIN FROM BTBD6
Authors
:
C. D. O. Cooper, A. C. W. Pike, E. Salah, P. Filippakopoulos, G. Bunkoczi J. M. Elkins, F. Von Delft, O. Gileadi, A. Edwards, J. Weigelt, C. H. Ar S. Knapp
Date
:
21 Dec 07 (Deposition) - 12 Feb 08 (Release) - 06 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Protein-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. D. O. Cooper, A. C. W. Pike, E. Salah, P. Filippakopoulos, G. Bunkoczi, J. M. Elkins, F. Von Delft, O. Gileadi, A. Edwards, J. Weigelt, C. H. Arrowsmith, S. Knapp
Crystal Structure Of Btb Domain From Btbd6
To Be Published
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: POTASSIUM ION (Ka)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
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No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
K
1
Ligand/Ion
POTASSIUM ION
3
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE B:74 , ASP B:75 , GLU B:105 , SER B:107 , HOH B:2068 , HOH B:2093
BINDING SITE FOR RESIDUE K B1109
2
AC2
SOFTWARE
LYS B:67 , ASP B:75
BINDING SITE FOR RESIDUE EDO B1110
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BTB (A:8-78,B:8-78)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BTB
PS50097
BTB domain profile.
BTBD6_HUMAN
83-153
2
A:8-78
B:8-78
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Exons
(3, 6)
Info
All Exons
Exon 1.1e (A:0-27 | B:0-27)
Exon 1.1g (A:28-67 (gaps) | B:28-67)
Exon 1.2d (A:67-108 | B:67-108)
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All Exon Boundaries
1: Boundary 1.1b/1.1e
2: Boundary 1.1e/1.1g
3: Boundary 1.1g/1.2d
4: Boundary 1.2d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000392554
1b
ENSE00001512364
chr14:
105715115-105715422
308
BTBD6_HUMAN
1-72
72
0
-
-
1.1e
ENST00000392554
1e
ENSE00001874698
chr14:
105715494-105715584
91
BTBD6_HUMAN
72-102
31
2
A:0-27
B:0-27
28
28
1.1g
ENST00000392554
1g
ENSE00001296252
chr14:
105715697-105715815
119
BTBD6_HUMAN
103-142
40
2
A:28-67 (gaps)
B:28-67
40
40
1.2d
ENST00000392554
2d
ENSE00001512363
chr14:
105715977-105717430
1454
BTBD6_HUMAN
142-485
344
2
A:67-108
B:67-108
42
42
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_BTB_2vkpB01 (B:1-108)
1b: PFAM_BTB_2vkpB02 (B:1-108)
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)
Clan
:
POZ
(36)
Family
:
BTB
(12)
Homo sapiens (Human)
(12)
1a
BTB-2vkpB01
B:1-108
1b
BTB-2vkpB02
B:1-108
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