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2VKG
Biol. Unit 1
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Asym.Unit (21 KB)
Biol.Unit 1 (145 KB)
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(1)
Title
:
COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS
Authors
:
M. Grininger, G. Noell, S. Trawoeger, E. Sinner, D. Oesterhelt
Date
:
19 Dec 07 (Deposition) - 30 Sep 08 (Release) - 06 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (12x)
Keywords
:
Biotechnological Application Of Dodecin Binding Properties, Flavin-Dna Ligand Hybrid, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Grininger, G. Noell, S. Trawoeger, E. Sinner, D. Oesterhelt
Electrochemical Switching Of The Flavoprotein Dodecin At Gold Surfaces Modified By Flavin-Dna Hybrid Linkers
Biointerphases V. 3 51 2008
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: [4-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIH... (CF4a)
2a: CHLORIDE ION (CLa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SODIUM ION (NAa)
5a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
CF4
12
Ligand/Ion
[4-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDROBENZO[G]PTERIDIN-10(2H)-YL)BUTYL]CARBAMICACID
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
NA
-1
Ligand/Ion
SODIUM ION
5
SO4
12
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:41 , HOH A:2053 , HOH A:2055 , HOH A:2059 , HOH A:2078
BINDING SITE FOR RESIDUE MG A1061
2
AC2
SOFTWARE
GLU A:14 , HOH A:2022 , HOH A:2023 , HOH A:2025 , HOH A:2030 , HOH A:2038
BINDING SITE FOR RESIDUE MG A1062
3
AC3
SOFTWARE
CL A:1066 , HOH A:2011 , HOH A:2081
BINDING SITE FOR RESIDUE NA A1063
4
AC4
SOFTWARE
GLN A:57 , NA A:1063 , HOH A:2036
BINDING SITE FOR RESIDUE CL A1066
5
AC5
SOFTWARE
SER A:15 , PHE A:16 , THR A:17
BINDING SITE FOR RESIDUE SO4 A1068
6
AC6
SOFTWARE
VAL A:35 , TRP A:36 , VAL A:44 , ALA A:45 , GLN A:53 , HOH A:2077
BINDING SITE FOR RESIDUE CF4 A1064
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2vkga_ (A:)
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Dodecin subunit-like
(56)
Superfamily
:
Dodecin-like
(33)
Family
:
Dodecin-like
(29)
Protein domain
:
automated matches
(24)
Halobacterium salinarum [TaxId: 478009]
(12)
1a
d2vkga_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2vkgA00 (A:2-63)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dodecin subunit-like
(24)
Homologous Superfamily
:
Flavin-binding protein dodecin
(24)
Halobacterium salinarum. Organism_taxid: 478009. Strain: r1.
(8)
1a
2vkgA00
A:2-63
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Dodecin_2vkgA01 (A:2-63)
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Clan
:
SHS2
(26)
Family
:
Dodecin
(3)
Halobacterium salinarium (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
(3)
1a
Dodecin-2vkgA01
A:2-63
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Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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Asym.Unit (21 KB)
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Header - Biol.Unit 1
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