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2VKC
Asym. Unit
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Asym.Unit (914 KB)
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Models
(28 )
Title
:
SOLUTION STRUCTURE OF THE B3BP SMR DOMAIN
Authors
:
T. Diercks, E. Ab, M. A. Daniels, R. N. Dejong, R. Besseling, R. Kaptein, G. E. Folkers
Date
:
18 Dec 07 (Deposition) - 14 Oct 08 (Release) - 24 Mar 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (28 x)
Keywords
:
Human Bcl3 Binding Protein, Alternative Splicing, Homologous Recombination, Mismatch Repair, Small Muts Related, Nucleotide-Binding, Atp-Binding, Ubl Conjugation, Phosphorylation, Smr, B3Bp, Hydrolase, Cytoplasm, Coiled Coil
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Diercks, E. Ab, M. A. Daniels, R. N. De Jong, R. Besseling, R. Kaptein, G. E. Folkers
Solution Structure And Characterization Of The Dna- Binding Activity Of The B3Bp-Smr Domain.
J. Mol. Biol. V. 383 1156 2008
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SMR (A:1691-1770)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SMR
PS50828
Smr domain profile.
N4BP2_HUMAN
1691-1770
1
A:1691-1770
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Exons
(3, 3)
Info
All Exons
Exon 1.17 (A:1666-1715)
Exon 1.18 (A:1715-1756)
Exon 1.19c (A:1756-1770)
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All Exon Boundaries
1: Boundary 1.16a/1.17
2: Boundary 1.17/1.18
3: Boundary 1.18/1.19c
4: Boundary 1.19c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000261435
1a
ENSE00002042060
chr4:
40058446-40058650
205
N4BP2_HUMAN
-
0
0
-
-
1.2
ENST00000261435
2
ENSE00001489911
chr4:
40075075-40075171
97
N4BP2_HUMAN
-
0
0
-
-
1.3
ENST00000261435
3
ENSE00001077370
chr4:
40098847-40099189
343
N4BP2_HUMAN
1-77
77
0
-
-
1.5b
ENST00000261435
5b
ENSE00001077368
chr4:
40103695-40104838
1144
N4BP2_HUMAN
77-458
382
0
-
-
1.6
ENST00000261435
6
ENSE00001077366
chr4:
40108520-40108644
125
N4BP2_HUMAN
458-500
43
0
-
-
1.7
ENST00000261435
7
ENSE00001077374
chr4:
40113704-40113792
89
N4BP2_HUMAN
500-529
30
0
-
-
1.8
ENST00000261435
8
ENSE00001077367
chr4:
40115052-40115128
77
N4BP2_HUMAN
530-555
26
0
-
-
1.9
ENST00000261435
9
ENSE00001077378
chr4:
40119489-40119644
156
N4BP2_HUMAN
555-607
53
0
-
-
1.10
ENST00000261435
10
ENSE00001077376
chr4:
40121552-40123929
2378
N4BP2_HUMAN
607-1400
794
0
-
-
1.11
ENST00000261435
11
ENSE00001077380
chr4:
40124747-40124832
86
N4BP2_HUMAN
1400-1428
29
0
-
-
1.12
ENST00000261435
12
ENSE00001077375
chr4:
40125780-40125825
46
N4BP2_HUMAN
1429-1444
16
0
-
-
1.13
ENST00000261435
13
ENSE00001077373
chr4:
40127754-40127950
197
N4BP2_HUMAN
1444-1509
66
0
-
-
1.14
ENST00000261435
14
ENSE00001077371
chr4:
40133421-40133539
119
N4BP2_HUMAN
1510-1549
40
0
-
-
1.15
ENST00000261435
15
ENSE00001035498
chr4:
40138564-40138702
139
N4BP2_HUMAN
1549-1595
47
0
-
-
1.16a
ENST00000261435
16a
ENSE00001035492
chr4:
40144293-40144481
189
N4BP2_HUMAN
1596-1658
63
0
-
-
1.17
ENST00000261435
17
ENSE00001035489
chr4:
40146252-40146420
169
N4BP2_HUMAN
1659-1715
57
1
A:1666-1715
50
1.18
ENST00000261435
18
ENSE00001035496
chr4:
40154400-40154523
124
N4BP2_HUMAN
1715-1756
42
1
A:1715-1756
42
1.19c
ENST00000261435
19c
ENSE00001860132
chr4:
40155812-40159872
4061
N4BP2_HUMAN
1756-1770
15
1
A:1756-1770
15
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SCOP Domains
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CATH Domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_DUF1771_2vkcA01 (A:1666-1683)
2a: PFAM_Smr_2vkcA02 (A:1691-1770)
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Clan
:
no clan defined [family: DUF1771]
(1)
Family
:
DUF1771
(1)
Homo sapiens (Human)
(1)
1a
DUF1771-2vkcA01
A:1666-1683
Clan
:
no clan defined [family: Smr]
(1)
Family
:
Smr
(1)
Homo sapiens (Human)
(1)
2a
Smr-2vkcA02
A:1691-1770
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Chain A
Asymmetric Unit 1
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