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2VJ1
Asym. Unit
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Asym.Unit (212 KB)
Biol.Unit 1 (204 KB)
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(1)
Title
:
A STRUCTURAL VIEW OF THE INACTIVATION OF THE SARS-CORONAVIRUS MAIN PROTEINASE BY BENZOTRIAZOLE ESTERS
Authors
:
K. H. G. Verschueren, K. Pumpor, S. Anemueller, J. R. Mesters, R. Hilgenfeld
Date
:
06 Dec 07 (Deposition) - 01 Jul 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Sars, Protease, Hydrolase, Polyprotein, Thiol Protease, Ribosomal Frameshift, Sars Coronavirus Main Proteinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. H. G. Verschueren, K. Pumpor, S. Anemueller, S. Chen, J. R. Mesters, R. Hilgenfeld
A Structural View Of The Inactivation Of The Sars Coronavirus Main Proteinase By Benzotriazole Esters.
Chem. Biol. V. 15 597 2008
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: BENZOIC ACID (BEZa)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
3a: 4-(DIMETHYLAMINO)BENZOIC ACID (XP1a)
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Label:
No.
Name
Count
Type
Full Name
1
BEZ
1
Ligand/Ion
BENZOIC ACID
2
DMS
3
Ligand/Ion
DIMETHYL SULFOXIDE
3
XP1
1
Ligand/Ion
4-(DIMETHYLAMINO)BENZOIC ACID
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:5 , VAL A:125 , GLN A:127 , LYS B:5 , ALA B:7 , GLN B:127
BINDING SITE FOR RESIDUE DMS B1302
2
AC2
SOFTWARE
PRO A:132 , THR A:196 , THR A:198 , GLN B:244 , ASP B:245
BINDING SITE FOR RESIDUE DMS B1303
3
AC3
SOFTWARE
GLN A:256
BINDING SITE FOR RESIDUE DMS A1302
4
AC4
SOFTWARE
ASN B:142 , GLY B:143 , CYS B:145 , HIS B:163 , GLU B:166
BINDING SITE FOR RESIDUE XP1 B1304
5
AC5
SOFTWARE
HIS A:41 , MET A:49 , HIS A:164 , MET A:165 , ASP A:187 , ARG A:188 , GLN A:189
BINDING SITE FOR RESIDUE BEZ A1303
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_R1AB_CVHSA_047 (Q189P, chain A/B, )
2: VAR_R1AB_CVHSA_048 (D248E, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_R1AB_CVHSA_047
*
Q
3429
P
R1AB_CVHSA
---
---
A/B
Q
189
P
2
UniProt
VAR_R1AB_CVHSA_048
*
D
3488
E
R1AB_CVHSA
---
---
A/B
D
248
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2vj1a_ (A:)
1b: SCOP_d2vj1b_ (B:)
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)
Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Viral cysteine protease of trypsin fold
(145)
Protein domain
:
automated matches
(47)
Human sars coronavirus [TaxId: 227859]
(1)
1a
d2vj1a_
A:
1b
d2vj1b_
B:
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CATH Domains
(0, 0 ; only for superseded entry 2CGG: 2,6)
Info
all CATH domains
1a: CATH_2cggA03 ()
1b: CATH_2cggB03 ()
2a: CATH_2cggA01 ()
2b: CATH_2cggB01 ()
2c: CATH_2cggA02 ()
2d: CATH_2cggB02 ()
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_C30_2vj1B01 (B:29-301)
1b: PFAM_Peptidase_C30_2vj1B02 (B:29-301)
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)
Clan
:
Peptidase_PA
(797)
Family
:
Peptidase_C30
(30)
Human SARS coronavirus (SARS-CoV) (Severe acute respiratory syndrome coronavirus)
(24)
1a
Peptidase_C30-2vj1B01
B:29-301
1b
Peptidase_C30-2vj1B02
B:29-301
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Asymmetric Unit 1
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Asym.Unit (212 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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