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2VIR
Asym. Unit
Info
Asym.Unit (117 KB)
Biol.Unit 1 (111 KB)
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(1)
Title
:
INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH A NEUTRALIZING ANTIBODY
Authors
:
T. Bizebard, D. Fleury, B. Gigant, S. A. Wharton, J. J. Skehel, M. Knossow
Date
:
22 Dec 97 (Deposition) - 29 Apr 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.25
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Complex (Hemagglutinin/Immmunoglobulin), Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Fleury, S. A. Wharton, J. J. Skehel, M. Knossow, T. Bizebard
Antigen Distortion Allows Influenza Virus To Escape Neutralization.
Nat. Struct. Biol. V. 5 119 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
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No.
Name
Count
Type
Full Name
1
ZN
3
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:203 , THR A:204 , HIS C:56 , GLU C:280
BINDING SITE FOR RESIDUE ZN C 1
2
AC2
SOFTWARE
GLU A:16 , ASP A:154 , HIS A:191
BINDING SITE FOR RESIDUE ZN A 211
3
AC3
SOFTWARE
ASP A:141 , HIS B:173
BINDING SITE FOR RESIDUE ZN A 212
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d2virb2 (B:121-221)
2a: SCOP_d2vira2 (A:111-210)
3a: SCOP_d2virb1 (B:1-120)
4a: SCOP_d2vira1 (A:1-110)
5a: SCOP_d2virc_ (C:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d2virb2
B:121-221
Protein domain
:
Immunoglobulin light chain lambda constant domain, CL-lambda
(68)
Mouse (Mus musculus) [TaxId: 10090]
(21)
2a
d2vira2
A:111-210
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 5 [TaxId: 10090]
(36)
3a
d2virb1
B:1-120
Protein domain
:
Immunoglobulin light chain lambda variable domain, VL-lambda
(89)
Mouse (Mus musculus) [TaxId: 10090]
(35)
4a
d2vira1
A:1-110
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
5a
d2virc_
C:
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2virC02 (C:57-272)
2a: CATH_2virC01 (C:43-56,C:273-309)
3a: CATH_2virB02 (B:124-221)
3b: CATH_2virA01 (A:1-110)
3c: CATH_2virB01 (B:1-123)
3d: CATH_2virA02 (A:111-210)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
House mouse (Mus musculus)
(3)
1a
2virC02
C:57-272
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Hemagglutinin; Chain A, domain 2
(27)
Homologous Superfamily
:
Hemagglutinin Chain A, Domain 2
(27)
House mouse (Mus musculus)
(3)
2a
2virC01
C:43-56,C:273-309
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
3a
2virB02
B:124-221
3b
2virA01
A:1-110
3c
2virB01
B:1-123
3d
2virA02
A:111-210
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_2virC01 (C:43-309)
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Clans
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)
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)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (strain A/Aichi/2/1968 H3N2)
(6)
1a
Hemagglutinin-2virC01
C:43-309
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Asymmetric Unit 1
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Asym.Unit (117 KB)
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