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2VI8
Biol. Unit 1
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Asym.Unit (78 KB)
Biol.Unit 1 (145 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S172ABSSHMT INTERNAL ALDIMINE
Authors
:
V. Rajaram, B. S. Bhavani, V. Prakash, N. Appaji Rao, H. S. Savithri, M. R. N. Murthy
Date
:
28 Nov 07 (Deposition) - 18 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Shmt, E53Q, Fthf, Transferase, Enzyme Memory, Pyridoxal Phosphate, One-Carbon Metabolism, Plp-Dependent Enzymes
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
V. Rajaram, B. S. Bhavani, V. Prakash, N. Appaji Rao, H. S. Savithri, M. R. N. Murthy
Crystal Structure Of S172Absshmt And Its Complexes
To Be Published
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
1b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3a: PHOSPHATE ION (PO4a)
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No.
Name
Count
Type
Full Name
1
MPD
4
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
2
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
3
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:51 , SER A:93 , GLY A:94 , ALA A:95 , HIS A:122 , ASP A:197 , ALA A:199 , HIS A:200 , THR A:223 , HIS A:225 , LYS A:226 , GLY A:256 , GLY A:257 , HOH A:2099 , HOH A:2186 , HOH A:2291 , HOH A:2304
BINDING SITE FOR RESIDUE PLP A1406
2
AC2
SOFTWARE
TYR A:152 , ARG A:156 , GLU A:185 , ILE A:186 , GLN A:321 , LEU A:322 , HOH A:2254 , HOH A:2257 , HOH A:2458 , HOH A:2459
BINDING SITE FOR RESIDUE MPD A1407
3
AC3
SOFTWARE
PHE A:131 , GLN A:135 , TYR A:136 , ILE A:254
BINDING SITE FOR RESIDUE MPD A1408
4
AC4
SOFTWARE
GLU A:371 , GLU A:375 , HOH A:2414 , HOH A:2460 , HOH A:2461
BINDING SITE FOR RESIDUE PO4 A1409
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2vi8a_ (A:)
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Protein Domains
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Organisms
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)
(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
Serine hydroxymethyltransferase
(50)
Bacillus stearothermophilus [TaxId: 1422]
(39)
1a
d2vi8a_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2vi8A02 (A:33-283)
2a: CATH_2vi8A01 (A:1-32,A:284-405)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Bacillus stearothermophilus. Organism_taxid: 1422.
(21)
1a
2vi8A02
A:33-283
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Bacillus stearothermophilus. Organism_taxid: 1422.
(21)
2a
2vi8A01
A:1-32,A:284-405
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_SHMT_2vi8A01 (A:4-380)
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Clan
:
PLP_aminotran
(240)
Family
:
SHMT
(45)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(38)
1a
SHMT-2vi8A01
A:4-380
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Asym.Unit (78 KB)
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