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2VGI
Asym. Unit
Info
Asym.Unit (276 KB)
Biol.Unit 1 (265 KB)
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(1)
Title
:
HUMAN ERYTHROCYTE PYRUVATE KINASE: R486W MUTANT
Authors
:
G. Valentini, L. Chiarelli, R. Fortin, M. Dolzan, A. Galizzi, D. J. Abra C. Wang, P. Bianchi, A. Zanella, A. Mattevi
Date
:
13 Nov 07 (Deposition) - 20 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.87
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Glycolysis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Valentini, L. R. Chiarelli, R. Fortin, M. Dolzan, A. Galizzi, D. J. Abraham, C. Wang, P. Bianchi, A. Zanella, A. Mattevi
Structure And Function Of Human Erythrocyte Pyruvate Kinase. Molecular Basis Of Nonspherocytic Hemolytic Anemia.
J. Biol. Chem. V. 277 23807 2002
[
close entry info
]
Hetero Components
(4, 16)
Info
All Hetero Components
1a: FRUCTOSE-1,6-DIPHOSPHATE (FBPa)
1b: FRUCTOSE-1,6-DIPHOSPHATE (FBPb)
1c: FRUCTOSE-1,6-DIPHOSPHATE (FBPc)
1d: FRUCTOSE-1,6-DIPHOSPHATE (FBPd)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
4a: 2-PHOSPHOGLYCOLIC ACID (PGAa)
4b: 2-PHOSPHOGLYCOLIC ACID (PGAb)
4c: 2-PHOSPHOGLYCOLIC ACID (PGAc)
4d: 2-PHOSPHOGLYCOLIC ACID (PGAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FBP
4
Ligand/Ion
FRUCTOSE-1,6-DIPHOSPHATE
2
K
4
Ligand/Ion
POTASSIUM ION
3
MN
4
Ligand/Ion
MANGANESE (II) ION
4
PGA
4
Ligand/Ion
2-PHOSPHOGLYCOLIC ACID
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:474 , THR A:475 , THR A:476 , THR A:477 , SER A:480 , TRP A:525 , ARG A:532 , GLY A:557 , ARG A:559 , PRO A:560 , GLY A:561 , SER A:562 , GLY A:563 , TYR A:564 , THR A:565
BINDING SITE FOR RESIDUE FBP A1574
02
AC2
SOFTWARE
ARG A:116 , LYS A:313 , GLU A:315 , ALA A:336 , GLY A:338 , ASP A:339 , THR A:371 , K A:1576 , MN A:1577
BINDING SITE FOR RESIDUE PGA A1575
03
AC3
SOFTWARE
ASN A:118 , SER A:120 , ASP A:156 , THR A:157 , SER A:286 , LYS A:313 , PGA A:1575
BINDING SITE FOR RESIDUE K A1576
04
AC4
SOFTWARE
GLU A:315 , ASP A:339 , PGA A:1575
BINDING SITE FOR RESIDUE MN A1577
05
AC5
SOFTWARE
LEU B:474 , THR B:475 , THR B:476 , THR B:477 , GLY B:478 , ARG B:479 , SER B:480 , TRP B:525 , ARG B:532 , GLY B:557 , ARG B:559 , GLY B:561 , SER B:562 , GLY B:563 , TYR B:564 , THR B:565
BINDING SITE FOR RESIDUE FBP B1574
06
AC6
SOFTWARE
ARG B:116 , ASP B:156 , LYS B:313 , GLU B:315 , ALA B:336 , GLY B:338 , ASP B:339 , THR B:371 , K B:1576 , MN B:1577
BINDING SITE FOR RESIDUE PGA B1575
07
AC7
SOFTWARE
ASN B:118 , SER B:120 , ASP B:156 , THR B:157 , SER B:286 , PGA B:1575
BINDING SITE FOR RESIDUE K B1576
08
AC8
SOFTWARE
GLU B:315 , ASP B:339 , PGA B:1575
BINDING SITE FOR RESIDUE MN B1577
09
AC9
SOFTWARE
THR C:475 , THR C:476 , THR C:477 , ARG C:479 , SER C:480 , TRP C:525 , ARG C:532 , GLY C:557 , ARG C:559 , PRO C:560 , GLY C:561 , SER C:562 , GLY C:563 , TYR C:564
BINDING SITE FOR RESIDUE FBP C1574
10
BC1
SOFTWARE
ARG C:116 , LYS C:313 , GLU C:315 , ALA C:336 , GLY C:338 , ASP C:339 , THR C:371 , K C:1576 , MN C:1577
BINDING SITE FOR RESIDUE PGA C1575
11
BC2
SOFTWARE
ASN C:118 , SER C:120 , ASP C:156 , THR C:157 , PGA C:1575
BINDING SITE FOR RESIDUE K C1576
12
BC3
SOFTWARE
GLU C:315 , ASP C:339 , PGA C:1575
BINDING SITE FOR RESIDUE MN C1577
13
BC4
SOFTWARE
LEU D:474 , THR D:475 , THR D:476 , THR D:477 , SER D:480 , TRP D:525 , ARG D:532 , GLY D:557 , ARG D:559 , GLY D:561 , SER D:562 , GLY D:563 , TYR D:564 , THR D:565
BINDING SITE FOR RESIDUE FBP D1574
14
BC5
SOFTWARE
ARG D:116 , GLU D:315 , ALA D:336 , ARG D:337 , GLY D:338 , ASP D:339 , THR D:371 , MN D:1577
BINDING SITE FOR RESIDUE PGA D1575
15
BC6
SOFTWARE
ASN D:118 , SER D:120 , ASP D:156 , THR D:157 , LYS D:158 , SER D:286
BINDING SITE FOR RESIDUE K D1576
16
BC7
SOFTWARE
GLU D:315 , ASP D:339 , PGA D:1575
BINDING SITE FOR RESIDUE MN D1577
[
close Site info
]
SAPs(SNPs)/Variants
(100, 399)
Info
(mutated residues are not available)
All SNPs/Variants
001: VAR_058469 (L73P, chain A/B/C/D, )
002: VAR_011436 (S80P, chain A/B/C/D, )
003: VAR_011437 (R86P, chain A/B/C/D, )
004: VAR_011438 (I90N, chain A/B/C/D, )
005: VAR_011439 (G95R, chain A/B/C/D, )
006: VAR_004028 (M107T, chain A/B/C/D, )
007: VAR_011440 (G111R, chain A/B/C/D, )
008: VAR_011441 (A115P, chain A/B/C/D, )
009: VAR_011442 (S120F, chain A/B/C/D, )
010: VAR_011443 (S130Y, chain A/B/C/D, )
011: VAR_004030 (V134D, chain A/B/C/D, )
012: VAR_011474 (I153T, chain A/B/C/D, )
013: VAR_058470 (A154T, chain A/B/C/D, )
014: VAR_004031 (L155P, chain A/B/C/D, )
015: VAR_011444 (G159V, chain A/B/C/D, )
016: VAR_004033 (R163C, chain A/B/C/D, )
017: VAR_058471 (R163L, chain A/B/C/D, )
018: VAR_058472 (G165V, chain A/B/C/D, )
019: VAR_004032 (E172Q, chain A/C/D, )
020: VAR_011475 (I219T, chain A/B/C/D, )
021: VAR_011445 (G222A, chain A/B/C/D, )
022: VAR_011447 (G263R, chain A/B/C/D, )
023: VAR_011448 (G263W, chain A/B/C/D, )
024: VAR_058473 (L272V, chain A/B/C/D, )
025: VAR_004035 (G275R, chain A/B/C/D, )
026: VAR_004036 (D281N, chain A/B/C/D, )
027: VAR_004037 (F287V, chain A/B/C/D, )
028: VAR_011449 (V288L, chain A/B/C/D, )
029: VAR_011446 (D293N, chain A/B/C/D, )
030: VAR_011450 (A295V, chain A/B/C/D, )
031: VAR_011451 (I310N, chain A/B/C/D, )
032: VAR_004038 (I314T, chain A/B/C/D, )
033: VAR_011452 (E315K, chain A/B/C/D, )
034: VAR_058474 (V320L, chain A/B/C/D, )
035: VAR_004039 (D331E, chain A/B/C/D, )
036: VAR_011453 (D331N, chain A/B/C/D, )
037: VAR_004040 (G332S, chain A/B/C/D, )
038: VAR_011476 (V335M, chain A/B/C/D, )
039: VAR_004041 (A336S, chain A/B/C/D, )
040: VAR_004042 (R337P, chain A/B/C/D, )
041: VAR_004043 (R337Q, chain A/B/C/D, )
042: VAR_004044 (D339H, chain A/B/C/D, )
043: VAR_004045 (G341A, chain A/B/C/D, )
044: VAR_011454 (G341D, chain A/B/C/D, )
045: VAR_011455 (I342F, chain A/B/C/D, )
046: VAR_011456 (K348N, chain A/B/C/D, )
047: VAR_011477 (A352D, chain A/B/C/D, )
048: VAR_004047 (I357T, chain A/B/C/D, )
049: VAR_058475 (G358E, chain A/B/C/D, )
050: VAR_004048 (R359C, chain A/B/C/D, )
051: VAR_004049 (R359H, chain A/B/C/D, )
052: VAR_004050 (N361D, chain A/B/C/D, )
053: VAR_011458 (G364D, chain A/B/C/D, )
054: VAR_004051 (V368F, chain A/B/C/D, )
055: VAR_058476 (L374P, chain A/B/C/D, )
056: VAR_011459 (S376I, chain A/B/C/D, )
057: VAR_004052 (T384M, chain A/B/C/D, )
058: VAR_011478 (R385W, chain A/B/C/D, )
059: VAR_011460 (E387G, chain A/B/C/D, )
060: VAR_011461 (D390N, chain A/B/C/D, )
061: VAR_004053 (A392T, chain A/B/C/D, )
062: VAR_004054 (N393K, chain A/B/C/D, )
063: VAR_004055 (N393S, chain A/B/C/D, )
064: VAR_011462 (A394D, chain A/B/C/D, )
065: VAR_011463 (A394V, chain A/B/C/D, )
066: VAR_011464 (T408A, chain A/B/C/D, )
067: VAR_004057 (T408I, chain A/B/C/D, )
068: VAR_004058 (Q421K, chain A/B/C/D, )
069: VAR_004059 (R426Q, chain A/B/C/D, )
070: VAR_004060 (R426W, chain A/B/C/D, )
071: VAR_011465 (E427A, chain A/B/C/D, )
072: VAR_011466 (E427D, chain A/B/C/D, )
073: VAR_004061 (A431T, chain A/B/C/D, )
074: VAR_004062 (G458D, chain A/B/C/D, )
075: VAR_004063 (A459V, chain A/B/C/D, )
076: VAR_004064 (V460M, chain A/B/C/D, )
077: VAR_011479 (A468G, chain A/B/C/D, )
078: VAR_004065 (A468V, chain A/B/C/D, )
079: VAR_011467 (T477A, chain A/B/C/D, )
080: VAR_011480 (R479H, chain A/B/C/D, )
081: VAR_011468 (S485F, chain A/B/C/D, )
082: VAR_004066 (W486W, chain A/B/C/D, )
083: VAR_011469 (R488Q, chain A/B/C/D, )
084: VAR_004067 (R490W, chain A/B/C/D, )
085: VAR_011470 (A495T, chain A/B/C/D, )
086: VAR_004068 (A495V, chain A/B/C/D, )
087: VAR_004069 (R498C, chain A/B/C/D, )
088: VAR_004070 (R498H, chain A/B/C/D, )
089: VAR_011471 (R504L, chain A/B/C/D, )
090: VAR_018848 (V506I, chain A/B/C/D, )
091: VAR_004071 (R510Q, chain A/B/C/D, )
092: VAR_011472 (G511R, chain A/B/C/D, )
093: VAR_011473 (R531C, chain A/B/C/D, )
094: VAR_004072 (R532Q, chain A/B/C/D, )
095: VAR_004073 (R532W, chain A/B/C/D, )
096: VAR_004074 (V552M, chain A/B/C/D, )
097: VAR_011481 (G557A, chain A/B/C/D, )
098: VAR_004075 (R559G, chain A/B/C/D, )
099: VAR_004076 (N566K, chain A/B/C/D, )
100: VAR_011482 (R569Q, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
001
UniProt
VAR_058469
L
73
P
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
L
73
P
002
UniProt
VAR_011436
S
80
P
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
S
80
P
003
UniProt
VAR_011437
R
86
P
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
86
P
004
UniProt
VAR_011438
I
90
N
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
I
90
N
005
UniProt
VAR_011439
G
95
R
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
95
R
006
UniProt
VAR_004028
M
107
T
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
M
107
T
007
UniProt
VAR_011440
G
111
R
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
111
R
008
UniProt
VAR_011441
A
115
P
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
115
P
009
UniProt
VAR_011442
S
120
F
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
S
120
F
010
UniProt
VAR_011443
S
130
Y
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
S
130
Y
011
UniProt
VAR_004030
V
134
D
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
V
134
D
012
UniProt
VAR_011474
I
153
T
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
I
153
T
013
UniProt
VAR_058470
A
154
T
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
154
T
014
UniProt
VAR_004031
L
155
P
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
L
155
P
015
UniProt
VAR_011444
G
159
V
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
159
V
016
UniProt
VAR_004033
R
163
C
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
163
C
017
UniProt
VAR_058471
R
163
L
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
163
L
018
UniProt
VAR_058472
G
165
V
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
165
V
019
UniProt
VAR_004032
E
172
Q
KPYR_HUMAN
Disease (PKRD)
---
A/C/D
E
172
Q
020
UniProt
VAR_011475
I
219
T
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
I
219
T
021
UniProt
VAR_011445
G
222
A
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
222
A
022
UniProt
VAR_011447
G
263
R
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
263
R
023
UniProt
VAR_011448
G
263
W
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
263
W
024
UniProt
VAR_058473
L
272
V
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
L
272
V
025
UniProt
VAR_004035
G
275
R
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
275
R
026
UniProt
VAR_004036
D
281
N
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
D
281
N
027
UniProt
VAR_004037
F
287
V
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
F
287
V
028
UniProt
VAR_011449
V
288
L
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
V
288
L
029
UniProt
VAR_011446
D
293
N
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
D
293
N
030
UniProt
VAR_011450
A
295
V
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
295
V
031
UniProt
VAR_011451
I
310
N
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
I
310
N
032
UniProt
VAR_004038
I
314
T
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
I
314
T
033
UniProt
VAR_011452
E
315
K
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
E
315
K
034
UniProt
VAR_058474
V
320
L
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
V
320
L
035
UniProt
VAR_004039
D
331
E
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
D
331
E
036
UniProt
VAR_011453
D
331
N
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
D
331
N
037
UniProt
VAR_004040
G
332
S
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
332
S
038
UniProt
VAR_011476
V
335
M
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
V
335
M
039
UniProt
VAR_004041
A
336
S
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
336
S
040
UniProt
VAR_004042
R
337
P
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
337
P
041
UniProt
VAR_004043
R
337
Q
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
337
Q
042
UniProt
VAR_004044
D
339
H
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
D
339
H
043
UniProt
VAR_004045
G
341
A
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
341
A
044
UniProt
VAR_011454
G
341
D
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
341
D
045
UniProt
VAR_011455
I
342
F
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
I
342
F
046
UniProt
VAR_011456
K
348
N
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
K
348
N
047
UniProt
VAR_011477
A
352
D
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
352
D
048
UniProt
VAR_004047
I
357
T
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
I
357
T
049
UniProt
VAR_058475
G
358
E
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
358
E
050
UniProt
VAR_004048
R
359
C
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
359
C
051
UniProt
VAR_004049
R
359
H
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
359
H
052
UniProt
VAR_004050
N
361
D
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
N
361
D
053
UniProt
VAR_011458
G
364
D
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
364
D
054
UniProt
VAR_004051
V
368
F
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
V
368
F
055
UniProt
VAR_058476
L
374
P
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
L
374
P
056
UniProt
VAR_011459
S
376
I
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
S
376
I
057
UniProt
VAR_004052
T
384
M
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
T
384
M
058
UniProt
VAR_011478
R
385
W
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
385
W
059
UniProt
VAR_011460
E
387
G
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
E
387
G
060
UniProt
VAR_011461
D
390
N
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
D
390
N
061
UniProt
VAR_004053
A
392
T
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
392
T
062
UniProt
VAR_004054
N
393
K
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
N
393
K
063
UniProt
VAR_004055
N
393
S
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
N
393
S
064
UniProt
VAR_011462
A
394
D
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
394
D
065
UniProt
VAR_011463
A
394
V
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
394
V
066
UniProt
VAR_011464
T
408
A
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
T
408
A
067
UniProt
VAR_004057
T
408
I
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
T
408
I
068
UniProt
VAR_004058
Q
421
K
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
Q
421
K
069
UniProt
VAR_004059
R
426
Q
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
426
Q
070
UniProt
VAR_004060
R
426
W
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
426
W
071
UniProt
VAR_011465
E
427
A
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
E
427
A
072
UniProt
VAR_011466
E
427
D
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
E
427
D
073
UniProt
VAR_004061
A
431
T
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
431
T
074
UniProt
VAR_004062
G
458
D
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
458
D
075
UniProt
VAR_004063
A
459
V
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
459
V
076
UniProt
VAR_004064
V
460
M
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
V
460
M
077
UniProt
VAR_011479
A
468
G
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
468
G
078
UniProt
VAR_004065
A
468
V
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
468
V
079
UniProt
VAR_011467
T
477
A
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
T
477
A
080
UniProt
VAR_011480
R
479
H
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
479
H
081
UniProt
VAR_011468
S
485
F
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
S
485
F
082
UniProt
VAR_004066
R
486
W
KPYR_HUMAN
Disease (PKRD)
116100695
A/B/C/D
W
486
W
083
UniProt
VAR_011469
R
488
Q
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
488
Q
084
UniProt
VAR_004067
R
490
W
KPYR_HUMAN
Disease (PKRD)
200133000
A/B/C/D
R
490
W
085
UniProt
VAR_011470
A
495
T
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
495
T
086
UniProt
VAR_004068
A
495
V
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
A
495
V
087
UniProt
VAR_004069
R
498
C
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
498
C
088
UniProt
VAR_004070
R
498
H
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
498
H
089
UniProt
VAR_011471
R
504
L
KPYR_HUMAN
Disease (PKRD)
185753709
A/B/C/D
R
504
L
090
UniProt
VAR_018848
V
506
I
KPYR_HUMAN
Polymorphism
8177988
A/B/C/D
V
506
I
091
UniProt
VAR_004071
R
510
Q
KPYR_HUMAN
Disease (PKRD)
113403872
A/B/C/D
R
510
Q
092
UniProt
VAR_011472
G
511
R
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
511
R
093
UniProt
VAR_011473
R
531
C
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
531
C
094
UniProt
VAR_004072
R
532
Q
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
532
Q
095
UniProt
VAR_004073
R
532
W
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
532
W
096
UniProt
VAR_004074
V
552
M
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
V
552
M
097
UniProt
VAR_011481
G
557
A
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
G
557
A
098
UniProt
VAR_004075
R
559
G
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
R
559
G
099
UniProt
VAR_004076
N
566
K
KPYR_HUMAN
Disease (PKRD)
---
A/B/C/D
N
566
K
100
UniProt
VAR_011482
R
569
Q
KPYR_HUMAN
Disease (PKRD)
61755431
A/B/C/D
R
569
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PYRUVATE_KINASE (A:308-320,B:308-320,C:308-320,D:30...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRUVATE_KINASE
PS00110
Pyruvate kinase active site signature.
KPYR_HUMAN
308-320
4
A:308-320
B:308-320
C:308-320
D:308-320
[
close PROSITE info
]
Exons
(10, 40)
Info
All Exons
Exon 1.3a (A:57-95 | B:57-95 | C:57-95 | D:57...)
Exon 1.4 (A:95-125 | B:95-125 | C:95-125 | D...)
Exon 1.5b (A:126-169 | B:126-166 | C:126-169 ...)
Exon 1.6b (A:170-232 | B:183-228 (gaps) | C:1...)
Exon 1.7 (A:232-322 | B:237-322 (gaps) | C:2...)
Exon 1.8 (A:322-372 | B:322-372 | C:322-372 ...)
Exon 1.9 (A:373-423 | B:373-423 | C:373-423 ...)
Exon 1.10 (A:424-479 | B:424-479 | C:424-479 ...)
Exon 1.11 (A:479-540 | B:479-540 | C:479-540 ...)
Exon 1.12a (A:540-573 | B:540-573 | C:540-573 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.3a
02: Boundary 1.3a/1.4
03: Boundary 1.4/1.5b
04: Boundary 1.5b/1.6b
05: Boundary 1.6b/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12a
11: Boundary 1.12a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000342741
1
ENSE00002191555
chr1:
155271225-155271087
139
KPYR_HUMAN
1-34
34
0
-
-
1.3a
ENST00000342741
3a
ENSE00001791302
chr1:
155270071-155269889
183
KPYR_HUMAN
34-95
62
4
A:57-95
B:57-95
C:57-95
D:57-95
39
39
39
39
1.4
ENST00000342741
4
ENSE00000961244
chr1:
155265547-155265456
92
KPYR_HUMAN
95-125
31
4
A:95-125
B:95-125
C:95-125
D:95-125
31
31
31
31
1.5b
ENST00000342741
5b
ENSE00000961245
chr1:
155265359-155265228
132
KPYR_HUMAN
126-169
44
4
A:126-169
B:126-166
C:126-169
D:126-167
44
41
44
42
1.6b
ENST00000342741
6b
ENSE00000961246
chr1:
155265093-155264907
187
KPYR_HUMAN
170-232
63
4
A:170-232
B:183-228 (gaps)
C:170-232
D:172-232
63
46
63
61
1.7
ENST00000342741
7
ENSE00000961247
chr1:
155264543-155264273
271
KPYR_HUMAN
232-322
91
4
A:232-322
B:237-322 (gaps)
C:232-322 (gaps)
D:232-322
91
86
91
91
1.8
ENST00000342741
8
ENSE00000961248
chr1:
155264176-155264026
151
KPYR_HUMAN
322-372
51
4
A:322-372
B:322-372
C:322-372
D:322-372
51
51
51
51
1.9
ENST00000342741
9
ENSE00000961249
chr1:
155263381-155263229
153
KPYR_HUMAN
373-423
51
4
A:373-423
B:373-423
C:373-423
D:373-423
51
51
51
51
1.10
ENST00000342741
10
ENSE00000961250
chr1:
155263134-155262968
167
KPYR_HUMAN
424-479
56
4
A:424-479
B:424-479
C:424-479
D:424-479
56
56
56
56
1.11
ENST00000342741
11
ENSE00000961251
chr1:
155261728-155261547
182
KPYR_HUMAN
479-540
62
4
A:479-540
B:479-540
C:479-540
D:479-540
62
62
62
62
1.12a
ENST00000342741
12a
ENSE00001835019
chr1:
155260469-155260044
426
KPYR_HUMAN
540-574
35
4
A:540-573
B:540-573
C:540-573
D:540-573
34
34
34
34
[
close EXON info
]
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d2vgia1 (A:160-261)
1b: SCOP_d2vgib1 (B:160-261)
1c: SCOP_d2vgic1 (C:160-261)
1d: SCOP_d2vgid1 (D:160-261)
2a: SCOP_d2vgia3 (A:440-573)
2b: SCOP_d2vgib3 (B:440-573)
2c: SCOP_d2vgic3 (C:440-573)
2d: SCOP_d2vgid3 (D:440-573)
3a: SCOP_d2vgia2 (A:57-159,A:262-439)
3b: SCOP_d2vgib2 (B:57-159,B:262-439)
3c: SCOP_d2vgic2 (C:57-159,C:262-439)
3d: SCOP_d2vgid2 (D:57-159,D:262-439)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PK beta-barrel domain-like
(31)
Superfamily
:
PK beta-barrel domain-like
(31)
Family
:
Pyruvate kinase beta-barrel domain
(28)
Protein domain
:
Pyruvate kinase (PK)
(28)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2vgia1
A:160-261
1b
d2vgib1
B:160-261
1c
d2vgic1
C:160-261
1d
d2vgid1
D:160-261
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Pyruvate kinase C-terminal domain-like
(59)
Superfamily
:
PK C-terminal domain-like
(30)
Family
:
Pyruvate kinase, C-terminal domain
(28)
Protein domain
:
Pyruvate kinase, C-terminal domain
(28)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d2vgia3
A:440-573
2b
d2vgib3
B:440-573
2c
d2vgic3
C:440-573
2d
d2vgid3
D:440-573
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Phosphoenolpyruvate/pyruvate domain
(92)
Family
:
Pyruvate kinase
(28)
Protein domain
:
Pyruvate kinase, N-terminal domain
(28)
Human (Homo sapiens) [TaxId: 9606]
(4)
3a
d2vgia2
A:57-159,A:262-439
3b
d2vgib2
B:57-159,B:262-439
3c
d2vgic2
C:57-159,C:262-439
3d
d2vgid2
D:57-159,D:262-439
[
close SCOP info
]
CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_2vgiB01 (B:57-85,B:429-565)
1b: CATH_2vgiA01 (A:57-85,A:429-573)
1c: CATH_2vgiC01 (C:57-85,C:429-573)
1d: CATH_2vgiD01 (D:57-85,D:429-573)
2a: CATH_2vgiA02 (A:86-159,A:263-428)
2b: CATH_2vgiB02 (B:86-159,B:263-428)
2c: CATH_2vgiC02 (C:86-159,C:263-428)
2d: CATH_2vgiD02 (D:86-159,D:263-428)
3a: CATH_2vgiD03 (D:160-262)
3b: CATH_2vgiC03 (C:160-262)
3c: CATH_2vgiA03 (A:160-262)
3d: CATH_2vgiB03 (B:160-262)
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(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Pyruvate Kinase; Chain: A, domain 1
(36)
Homologous Superfamily
:
[code=3.40.1380.20, no name defined]
(20)
Human (Homo sapiens)
(6)
1a
2vgiB01
B:57-85,B:429-565
1b
2vgiA01
A:57-85,A:429-573
1c
2vgiC01
C:57-85,C:429-573
1d
2vgiD01
D:57-85,D:429-573
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Phosphoenolpyruvate-binding domains
(67)
Human (Homo sapiens)
(6)
2a
2vgiA02
A:86-159,A:263-428
2b
2vgiB02
B:86-159,B:263-428
2c
2vgiC02
C:86-159,C:263-428
2d
2vgiD02
D:86-159,D:263-428
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
M1 Pyruvate Kinase; Domain 3
(24)
Homologous Superfamily
:
M1 Pyruvate Kinase; Domain 3
(20)
Human (Homo sapiens)
(6)
3a
2vgiD03
D:160-262
3b
2vgiC03
C:160-262
3c
2vgiA03
A:160-262
3d
2vgiB03
B:160-262
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_PK_2vgiD01 (D:85-438)
1b: PFAM_PK_2vgiD02 (D:85-438)
1c: PFAM_PK_2vgiD03 (D:85-438)
1d: PFAM_PK_2vgiD04 (D:85-438)
2a: PFAM_PK_C_2vgiD05 (D:452-572)
2b: PFAM_PK_C_2vgiD06 (D:452-572)
2c: PFAM_PK_C_2vgiD07 (D:452-572)
2d: PFAM_PK_C_2vgiD08 (D:452-572)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PK_TIM
(63)
Family
:
PK
(17)
Homo sapiens (Human)
(7)
1a
PK-2vgiD01
D:85-438
1b
PK-2vgiD02
D:85-438
1c
PK-2vgiD03
D:85-438
1d
PK-2vgiD04
D:85-438
Clan
:
no clan defined [family: PK_C]
(19)
Family
:
PK_C
(19)
Homo sapiens (Human)
(7)
2a
PK_C-2vgiD05
D:452-572
2b
PK_C-2vgiD06
D:452-572
2c
PK_C-2vgiD07
D:452-572
2d
PK_C-2vgiD08
D:452-572
[
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]
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