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2VG8
Asym. Unit
Info
Asym.Unit (88 KB)
Biol.Unit 1 (84 KB)
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(1)
Title
:
CHARACTERIZATION AND ENGINEERING OF THE BIFUNCTIONAL N- AND O-GLUCOSYLTRANSFERASE INVOLVED IN XENOBIOTIC METABOLISM IN PLANTS
Authors
:
M. Brazier-Hicks, W. A. Offen, M. C. Gershater, T. J. Revett, E. K. Lim, D. J. Bowles, G. J. Davies, R. Edwards
Date
:
09 Nov 07 (Deposition) - 04 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Plant Glycosylation, N-Glucosyltransferase, Transferase, N-Glycosylation, Glycosyltransferase, S-Glucosyltransferase, O-Glucosyltransferase, Udp-Glucose- Dependent
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Brazier-Hicks, W. A. Offen, M. C. Gershater, T. J. Revett, E. K. Lim, D. J. Bowles, G. J. Davies, R. Edwards
Characterization And Engineering Of The Bifunctional N- And O-Glucosyltransferase Involved In Xenobiotic Metabolism In Plants.
Proc. Nat. Acad. Sci. Usa V. 104 20238 2007
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
2a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
3a: URIDINE-5'-DIPHOSPHATE (UDPa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
2
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:18 , ILE A:21 , GLY A:276 , SER A:277 , VAL A:303 , TRP A:346 , ALA A:347 , GLN A:349 , HIS A:364 , GLY A:366 , TRP A:367 , ASN A:368 , SER A:369 , GLU A:372 , TYR A:386 , TRS A:1478 , HOH A:2006 , HOH A:2223 , HOH A:2275 , HOH A:2350 , HOH A:2353
BINDING SITE FOR RESIDUE UDP A1477
02
AC2
SOFTWARE
GLY A:18 , HIS A:19 , PRO A:139 , GLY A:366 , TRP A:367 , ALA A:387 , GLU A:388 , UDP A:1477 , EDO A:1480 , HOH A:2007 , HOH A:2351 , HOH A:2353
BINDING SITE FOR RESIDUE TRS A1478
03
AC3
SOFTWARE
TRP A:383 , PRO A:384 , VAL A:414 , HOH A:2291 , HOH A:2297 , HOH A:2352
BINDING SITE FOR RESIDUE EDO A1479
04
AC4
SOFTWARE
HIS A:19 , ILE A:86 , TYR A:315 , ALA A:387 , TRS A:1478 , HOH A:2353
BINDING SITE FOR RESIDUE EDO A1480
05
AC5
SOFTWARE
PHE A:275 , THR A:280 , LEU A:281 , TRP A:302 , VAL A:303 , ILE A:304 , ARG A:305 , HOH A:2354
BINDING SITE FOR RESIDUE EDO A1481
06
AC6
SOFTWARE
HIS A:34 , LEU A:328 , PRO A:330 , SER A:461 , LYS A:468
BINDING SITE FOR RESIDUE EDO A1482
07
AC7
SOFTWARE
ILE A:42 , ALA A:43 , GLY A:44 , GLY A:46 , PHE A:67 , LEU A:68 , PRO A:69 , PRO A:70 , EDO A:1484 , HOH A:2355
BINDING SITE FOR RESIDUE EDO A1483
08
AC8
SOFTWARE
GLY A:46 , PRO A:47 , PRO A:70 , EDO A:1483 , HOH A:2026 , HOH A:2355
BINDING SITE FOR RESIDUE EDO A1484
09
AC9
SOFTWARE
SER A:159 , GLU A:161 , LYS A:443 , CYS A:447
BINDING SITE FOR RESIDUE EDO A1485
10
BC1
SOFTWARE
PRO A:152 , LYS A:202 , LYS A:205 , GLU A:334 , ARG A:335 , HOH A:2247 , HOH A:2356
BINDING SITE FOR RESIDUE EDO A1486
11
BC2
SOFTWARE
GLY A:173 , ASN A:221 , ASP A:399 , HOH A:2281 , HOH A:2357
BINDING SITE FOR RESIDUE EDO A1487
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: UDPGT (A:346-389)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UDPGT
PS00375
UDP-glycosyltransferases signature.
U72B1_ARATH
346-389
1
A:346-389
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2vg8a_ (A:)
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)
Folds
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Superfamily
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Family
:
UDPGT-like
(10)
Protein domain
:
Hydroquinone glucosyltransferase
(3)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(3)
1a
d2vg8a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_UDPGT_2vg8A01 (A:230-440)
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Clan
:
GT-B
(132)
Family
:
UDPGT
(4)
Arabidopsis thaliana (Mouse-ear cress)
(3)
1a
UDPGT-2vg8A01
A:230-440
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Chain A
Asymmetric Unit 1
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