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2VG3
Biol. Unit 1
Info
Asym.Unit (201 KB)
Biol.Unit 1 (100 KB)
Biol.Unit 2 (98 KB)
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(1)
Title
:
RV2361 WITH CITRONELLYL PYROPHOSPHATE
Authors
:
J. H. Naismith, W. Wang, C. Dong
Date
:
08 Nov 07 (Deposition) - 06 May 08 (Release) - 28 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Transferase, Cell Wall Biogenesis/Degradation, Cell Cycle, Prenyl Transferase, Peptidoglycan Synthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Wang, C. Dong, M. Mcneil, D. Kaur, S. Mahapatra, D. Crick, J. H. Naismith
The Structural Basis Of Chain Length Control In Rv1086
J. Mol. Biol. V. 381 129 2008
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: GLYCEROL (GOLa)
3a: GERANYL DIPHOSPHATE (GPPa)
3b: GERANYL DIPHOSPHATE (GPPb)
3c: GERANYL DIPHOSPHATE (GPPc)
3d: GERANYL DIPHOSPHATE (GPPd)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
6a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
GPP
2
Ligand/Ion
GERANYL DIPHOSPHATE
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
PO4
1
Ligand/Ion
PHOSPHATE ION
6
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC8 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:76 , GPP A:1298 , HOH A:2034 , HOH A:2035 , HOH C:2095
BINDING SITE FOR RESIDUE MG A1297
02
AC2
SOFTWARE
MET A:75 , ASP A:76 , GLY A:77 , ASN A:78 , GLY A:79 , ARG A:80 , ARG A:89 , HIS A:93 , GLY A:96 , VAL A:100 , ALA A:119 , ARG A:127 , MG A:1297 , HOH A:2034 , HOH A:2035 , HOH A:2051 , HOH A:2137 , HOH C:2095
BINDING SITE FOR RESIDUE GPP A1298
03
AC3
SOFTWARE
ARG A:244 , ARG A:250 , SER A:252 , HOH A:2034 , HOH A:2035 , HOH A:2138 , HOH A:2139 , ARG C:292 , PHE C:293 , GLY C:294
BINDING SITE FOR RESIDUE PO4 A1299
04
AC7
SOFTWARE
ASP C:76 , GPP C:1298 , HOH C:2010 , HOH C:2011 , HOH C:2096
BINDING SITE FOR RESIDUE MG C1297
05
AC8
SOFTWARE
ARG A:292 , MET C:75 , ASP C:76 , GLY C:77 , ASN C:78 , GLY C:79 , ARG C:80 , ARG C:89 , HIS C:93 , ASN C:124 , ARG C:127 , MG C:1297 , HOH C:2010 , HOH C:2011 , HOH C:2023 , HOH C:2096 , HOH C:2097 , HOH C:2098
BINDING SITE FOR RESIDUE GPP C1298
06
BC1
SOFTWARE
HOH A:2057 , ARG B:292 , MET D:75 , ASP D:76 , GLY D:77 , ASN D:78 , GLY D:79 , ARG D:80 , ARG D:89 , HIS D:93 , ALA D:119 , ARG D:127 , ASN D:139 , TYR D:191 , MG D:1297 , HOH D:2010 , HOH D:2011 , HOH D:2024 , HOH D:2081 , HOH D:2082
BINDING SITE FOR RESIDUE GPP D1298
07
BC2
SOFTWARE
ARG A:144 , GLU A:173 , ARG B:292 , PHE B:293 , HOH B:2106 , HOH D:2081
BINDING SITE FOR RESIDUE PO4 B1300
08
BC3
SOFTWARE
SER A:169 , ARG B:66 , ARG B:291
BINDING SITE FOR RESIDUE CL B1301
09
BC4
SOFTWARE
ARG A:66 , ARG A:291 , ARG B:168 , SER B:169
BINDING SITE FOR RESIDUE CL B1302
10
BC5
SOFTWARE
ASP A:21 , HOH A:2002 , ARG C:168 , HOH C:2099
BINDING SITE FOR RESIDUE SO4 C1299
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: UPP_SYNTHASE (A:240-257,C:240-257)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UPP_SYNTHASE
PS01066
Undecaprenyl pyrophosphate synthase family signature.
DPDS_MYCTO
240-257
2
A:240-257
-
C:240-257
-
DPDS_MYCTU
240-257
2
A:240-257
-
C:240-257
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Nucleic
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (201 KB)
Header - Asym.Unit
Biol.Unit 1 (100 KB)
Header - Biol.Unit 1
Biol.Unit 2 (98 KB)
Header - Biol.Unit 2
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