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2VG2
Biol. Unit 2
Info
Asym.Unit (207 KB)
Biol.Unit 1 (103 KB)
Biol.Unit 2 (101 KB)
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(1)
Title
:
RV2361 WITH IPP
Authors
:
J. H. Naismith, W. Wang, C. Dong
Date
:
07 Nov 07 (Deposition) - 13 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Cell Wall Biogenesis/Degradation, Cell Cycle, Cell Shape, Transferase, Cell Division, Prenyl Transferase, Peptidoglycan Synthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Wang, C. Dong, M. Mcneil, D. Kaur, S. Mahapatra, D. Crick, J. H. Naismith
The Structural Basis Of Chain Length Control In Rv1086.
J. Mol. Biol. V. 381 129 2008
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: DIPHOSPHATE (DPOa)
2b: DIPHOSPHATE (DPOb)
2c: DIPHOSPHATE (DPOc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
4a: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIP... (IPEa)
4b: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIP... (IPEb)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
5d: PHOSPHATE ION (PO4d)
5e: PHOSPHATE ION (PO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
DPO
1
Ligand/Ion
DIPHOSPHATE
3
GOL
4
Ligand/Ion
GLYCEROL
4
IPE
1
Ligand/Ion
3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
5
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(11, 11)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
MET B:75 , ASP B:76 , GLY B:77 , ASN B:78 , GLY B:79 , ARG B:80 , ARG B:89 , HIS B:93 , ARG B:127 , IPE B:1297 , HOH B:2176 , ARG D:292
BINDING SITE FOR RESIDUE DPO B1296
02
AC5
SOFTWARE
ASP D:76 , GLY D:77 , ASN D:78 , GLY D:79 , ARG D:89 , HIS D:93 , ARG D:127 , HOH D:2061 , HOH D:2162
BINDING SITE FOR RESIDUE PO4 D1297
03
AC7
SOFTWARE
TYR B:118 , ALA B:119 , SER B:121 , ASN B:124 , ARG B:127 , ARG B:244 , ARG B:250 , SER B:252 , DPO B:1296 , HOH B:2067 , HOH B:2176 , HOH B:2177 , TYR D:261 , ARG D:292 , PHE D:293 , GLY D:294
BINDING SITE FOR RESIDUE IPE B1297
04
AC8
SOFTWARE
THR B:29 , TRP B:32 , PRO B:33 , VAL B:34 , LYS B:94 , MET B:95 , GLU B:97 , ALA B:98 , ARG B:146 , HOH B:2015 , HOH B:2054
BINDING SITE FOR RESIDUE GOL B1298
05
BC2
SOFTWARE
GOL A:1305 , THR B:122 , TRP B:125 , ARG B:165 , HOH B:2178
BINDING SITE FOR RESIDUE GOL B1299
06
BC3
SOFTWARE
LYS B:126 , ARG B:127 , SER B:128
BINDING SITE FOR RESIDUE GOL B1300
07
BC7
SOFTWARE
GLY B:294 , SER B:295 , HOH B:2179
BINDING SITE FOR RESIDUE GOL B1301
08
BC8
SOFTWARE
ALA A:64 , LEU A:67 , ASN A:69 , HOH A:2062 , HOH A:2230 , PRO B:129 , GLU B:130 , HOH B:2076
BINDING SITE FOR RESIDUE GOL A1301
09
BC9
SOFTWARE
PRO B:164 , GOL B:1299
BINDING SITE FOR RESIDUE GOL A1305
10
CC2
SOFTWARE
ARG A:66 , THR A:290 , ARG A:291 , SER B:169
BINDING SITE FOR RESIDUE CL A1303
11
CC5
SOFTWARE
GLY C:215 , LYS D:113 , TRP D:114 , ASP D:185 , THR D:188 , HOH D:2027
BINDING SITE FOR RESIDUE PO4 D1298
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: UPP_SYNTHASE (B:240-257,D:240-257)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UPP_SYNTHASE
PS01066
Undecaprenyl pyrophosphate synthase family signature.
DPDS_MYCTO
240-257
2
-
B:240-257
-
D:240-257
DPDS_MYCTU
240-257
2
-
B:240-257
-
D:240-257
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (207 KB)
Header - Asym.Unit
Biol.Unit 1 (103 KB)
Header - Biol.Unit 1
Biol.Unit 2 (101 KB)
Header - Biol.Unit 2
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