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2VG2
Asym. Unit
Info
Asym.Unit (207 KB)
Biol.Unit 1 (103 KB)
Biol.Unit 2 (101 KB)
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(1)
Title
:
RV2361 WITH IPP
Authors
:
J. H. Naismith, W. Wang, C. Dong
Date
:
07 Nov 07 (Deposition) - 13 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Cell Wall Biogenesis/Degradation, Cell Cycle, Cell Shape, Transferase, Cell Division, Prenyl Transferase, Peptidoglycan Synthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Wang, C. Dong, M. Mcneil, D. Kaur, S. Mahapatra, D. Crick, J. H. Naismith
The Structural Basis Of Chain Length Control In Rv1086.
J. Mol. Biol. V. 381 129 2008
[
close entry info
]
Hetero Components
(5, 23)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: DIPHOSPHATE (DPOa)
2b: DIPHOSPHATE (DPOb)
2c: DIPHOSPHATE (DPOc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
4a: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIP... (IPEa)
4b: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIP... (IPEb)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
5d: PHOSPHATE ION (PO4d)
5e: PHOSPHATE ION (PO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
DPO
3
Ligand/Ion
DIPHOSPHATE
3
GOL
12
Ligand/Ion
GLYCEROL
4
IPE
2
Ligand/Ion
3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
5
PO4
5
Ligand/Ion
PHOSPHATE ION
[
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]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:75 , ASP A:76 , GLY A:77 , ASN A:78 , GLY A:79 , ARG A:80 , ARG A:89 , HIS A:93 , ARG A:127 , IPE A:1298 , ARG C:292 , ALA C:296
BINDING SITE FOR RESIDUE DPO A1297
02
AC2
SOFTWARE
MET B:75 , ASP B:76 , GLY B:77 , ASN B:78 , GLY B:79 , ARG B:80 , ARG B:89 , HIS B:93 , ARG B:127 , IPE B:1297 , HOH B:2176 , ARG D:292
BINDING SITE FOR RESIDUE DPO B1296
03
AC3
SOFTWARE
MET C:75 , ASP C:76 , GLY C:77 , ASN C:78 , GLY C:79 , ARG C:80 , ARG C:89 , HIS C:93 , ARG C:127 , GOL C:1301 , HOH C:2176
BINDING SITE FOR RESIDUE DPO C1297
04
AC4
SOFTWARE
SER C:121 , GLU C:123 , ASN C:124 , SER C:252 , HOH C:2177 , HOH C:2178 , HOH C:2179
BINDING SITE FOR RESIDUE PO4 C1298
05
AC5
SOFTWARE
ASP D:76 , GLY D:77 , ASN D:78 , GLY D:79 , ARG D:89 , HIS D:93 , ARG D:127 , HOH D:2061 , HOH D:2162
BINDING SITE FOR RESIDUE PO4 D1297
06
AC6
SOFTWARE
VAL A:74 , MET A:75 , ASP A:76 , TYR A:118 , SER A:121 , ASN A:124 , ARG A:244 , ARG A:250 , SER A:252 , DPO A:1297 , HOH A:2225 , HOH A:2226 , TYR C:261 , ARG C:292 , PHE C:293 , GLY C:294
BINDING SITE FOR RESIDUE IPE A1298
07
AC7
SOFTWARE
TYR B:118 , ALA B:119 , SER B:121 , ASN B:124 , ARG B:127 , ARG B:244 , ARG B:250 , SER B:252 , DPO B:1296 , HOH B:2067 , HOH B:2176 , HOH B:2177 , TYR D:261 , ARG D:292 , PHE D:293 , GLY D:294
BINDING SITE FOR RESIDUE IPE B1297
08
AC8
SOFTWARE
THR B:29 , TRP B:32 , PRO B:33 , VAL B:34 , LYS B:94 , MET B:95 , GLU B:97 , ALA B:98 , ARG B:146 , HOH B:2015 , HOH B:2054
BINDING SITE FOR RESIDUE GOL B1298
09
AC9
SOFTWARE
TRP A:125 , PRO A:164 , ARG A:165 , HOH A:2227
BINDING SITE FOR RESIDUE GOL A1299
10
BC1
SOFTWARE
TRP A:125 , LYS A:126 , ARG A:127 , SER A:128 , HOH A:2228 , HOH A:2229
BINDING SITE FOR RESIDUE GOL A1300
11
BC2
SOFTWARE
GOL A:1305 , THR B:122 , TRP B:125 , ARG B:165 , HOH B:2178
BINDING SITE FOR RESIDUE GOL B1299
12
BC3
SOFTWARE
LYS B:126 , ARG B:127 , SER B:128
BINDING SITE FOR RESIDUE GOL B1300
13
BC4
SOFTWARE
ALA C:228 , LEU C:231 , ARG C:233 , PRO C:234 , ILE C:236 , GLN C:258 , GOL C:1300 , HOH C:2180 , HOH C:2181
BINDING SITE FOR RESIDUE GOL C1299
14
BC5
SOFTWARE
ARG A:198 , ALA C:228 , ASP C:238 , TRP C:257 , GOL C:1299 , HOH C:2181 , HOH C:2182
BINDING SITE FOR RESIDUE GOL C1300
15
BC6
SOFTWARE
MET C:75 , ASN C:78 , TYR C:118 , ALA C:119 , ASN C:124 , DPO C:1297 , HOH C:2177
BINDING SITE FOR RESIDUE GOL C1301
16
BC7
SOFTWARE
GLY B:294 , SER B:295 , HOH B:2179
BINDING SITE FOR RESIDUE GOL B1301
17
BC8
SOFTWARE
ALA A:64 , LEU A:67 , ASN A:69 , HOH A:2062 , HOH A:2230 , PRO B:129 , GLU B:130 , HOH B:2076
BINDING SITE FOR RESIDUE GOL A1301
18
BC9
SOFTWARE
PRO B:164 , GOL B:1299
BINDING SITE FOR RESIDUE GOL A1305
19
CC1
SOFTWARE
THR A:29 , TRP A:32 , PRO A:33 , VAL A:34 , LYS A:94 , MET A:95 , GLU A:97 , ALA A:98 , ARG A:146 , HOH A:2077 , HOH A:2231
BINDING SITE FOR RESIDUE GOL A1302
20
CC2
SOFTWARE
ARG A:66 , THR A:290 , ARG A:291 , SER B:169
BINDING SITE FOR RESIDUE CL A1303
21
CC3
SOFTWARE
PRO A:20 , ASP A:21 , HOH A:2009 , ARG C:168 , HOH C:2183
BINDING SITE FOR RESIDUE PO4 C1302
22
CC4
SOFTWARE
ASP A:273 , ASP A:275 , ARG A:277
BINDING SITE FOR RESIDUE PO4 A1304
23
CC5
SOFTWARE
GLY C:215 , LYS D:113 , TRP D:114 , ASP D:185 , THR D:188 , HOH D:2027
BINDING SITE FOR RESIDUE PO4 D1298
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: UPP_SYNTHASE (A:240-257,B:240-257,C:240-257,D:24...)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UPP_SYNTHASE
PS01066
Undecaprenyl pyrophosphate synthase family signature.
DPDS_MYCTO
240-257
4
A:240-257
B:240-257
C:240-257
D:240-257
DPDS_MYCTU
240-257
4
A:240-257
B:240-257
C:240-257
D:240-257
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (207 KB)
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