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Biol. Unit 2
Info
Asym.Unit (443 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 10 (42 KB)
Biol.Unit 11 (42 KB)
Biol.Unit 12 (42 KB)
Biol.Unit 2 (42 KB)
Biol.Unit 3 (42 KB)
Biol.Unit 4 (43 KB)
Biol.Unit 5 (43 KB)
Biol.Unit 6 (41 KB)
Biol.Unit 7 (42 KB)
Biol.Unit 8 (41 KB)
Biol.Unit 9 (42 KB)
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(1)
Title
:
STRUCTURE OF THE SYMMETRIC MAD2 DIMER
Authors
:
M. Yang, B. Li, C. -J. Liu, D. R. Tomchick, M. Machius, J. Rizo, H. Yu, X. L
Date
:
05 Nov 07 (Deposition) - 18 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Keywords
:
Mad2, Mad1, Cdc2, Nucleus, Mitosis, Anaphase, Cell Cycle, Cell Division, Spindle Checkpoint, Anaphase-Promoting Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yang, B. Li, C. -J. Liu, D. R. Tomchick, M. Machius, J. Rizo, H. Yu, X. Luo
Insights Into Mad2 Regulation In The Spindle Checkpoint Revealed By The Crystal Structure Of The Symmetric Mad2 Dimer.
Plos Biol. V. 6 E50 2008
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1aa: CHLORIDE ION (CLaa)
1ab: CHLORIDE ION (CLab)
1ac: CHLORIDE ION (CLac)
1ad: CHLORIDE ION (CLad)
1ae: CHLORIDE ION (CLae)
1af: CHLORIDE ION (CLaf)
1ag: CHLORIDE ION (CLag)
1ah: CHLORIDE ION (CLah)
1ai: CHLORIDE ION (CLai)
1aj: CHLORIDE ION (CLaj)
1ak: CHLORIDE ION (CLak)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
1y: CHLORIDE ION (CLy)
1z: CHLORIDE ION (CLz)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
3a: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3a)
3b: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3b)
3c: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3c)
3d: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3d)
3e: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3e)
3f: 3,6,9,12,15,18,21,24,27,30,33,36,3... (PE3f)
4a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
4b: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4b)
4c: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4c)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
PE3
1
Ligand/Ion
3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL
4
PE4
-1
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
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]
Sites
(6, 6)
Info
All Sites
1: AC2 (SOFTWARE)
2: BC1 (SOFTWARE)
3: CC1 (SOFTWARE)
4: CC8 (SOFTWARE)
5: DC6 (SOFTWARE)
6: EC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ASP B:205 , HOH B:2126 , HOH B:2130
BINDING SITE FOR RESIDUE MG B1206
2
BC1
SOFTWARE
ARG B:99 , ILE B:175 , LYS E:192 , HOH E:2069
BINDING SITE FOR RESIDUE CL E3102
3
CC1
SOFTWARE
LYS B:192 , HOH B:2074 , ARG H:99 , PHE H:174 , ILE H:175
BINDING SITE FOR RESIDUE CL B3111
4
CC8
SOFTWARE
ARG B:182 , SER B:185 , LYS B:192 , SER H:178 , HOH H:2095
BINDING SITE FOR RESIDUE CL B1207
5
DC6
SOFTWARE
SER B:178 , SER E:185 , LYS E:192
BINDING SITE FOR RESIDUE CL B1208
6
EC9
SOFTWARE
GLN B:34 , ARG B:35 , LEU B:145 , VAL B:147 , HOH B:2020 , HOH B:2132
BINDING SITE FOR RESIDUE PE3 B1210
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HORMA (B:14-197)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HORMA
PS50815
HORMA domain profile.
MD2L1_HUMAN
14-197
1
-
B:14-197
-
-
-
-
-
-
-
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2vfxa_ (A:)
1b: SCOP_d2vfxb_ (B:)
1c: SCOP_d2vfxk_ (K:)
1d: SCOP_d2vfxl_ (L:)
1e: SCOP_d2vfxc_ (C:)
1f: SCOP_d2vfxd_ (D:)
1g: SCOP_d2vfxe_ (E:)
1h: SCOP_d2vfxf_ (F:)
1i: SCOP_d2vfxg_ (G:)
1j: SCOP_d2vfxh_ (H:)
1k: SCOP_d2vfxi_ (I:)
1l: SCOP_d2vfxj_ (J:)
View:
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)
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(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
The spindle assembly checkpoint protein mad2
(8)
Superfamily
:
The spindle assembly checkpoint protein mad2
(8)
Family
:
The spindle assembly checkpoint protein mad2
(7)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2vfxa_
A:
1b
d2vfxb_
B:
1c
d2vfxk_
K:
1d
d2vfxl_
L:
1e
d2vfxc_
C:
1f
d2vfxd_
D:
1g
d2vfxe_
E:
1h
d2vfxf_
F:
1i
d2vfxg_
G:
1j
d2vfxh_
H:
1k
d2vfxi_
I:
1l
d2vfxj_
J:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_HORMA_2vfxL01 (L:12-191)
1b: PFAM_HORMA_2vfxL02 (L:12-191)
1c: PFAM_HORMA_2vfxL03 (L:12-191)
1d: PFAM_HORMA_2vfxL04 (L:12-191)
1e: PFAM_HORMA_2vfxL05 (L:12-191)
1f: PFAM_HORMA_2vfxL06 (L:12-191)
1g: PFAM_HORMA_2vfxL07 (L:12-191)
1h: PFAM_HORMA_2vfxL08 (L:12-191)
1i: PFAM_HORMA_2vfxL09 (L:12-191)
1j: PFAM_HORMA_2vfxL10 (L:12-191)
1k: PFAM_HORMA_2vfxL11 (L:12-191)
1l: PFAM_HORMA_2vfxL12 (L:12-191)
View:
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Clans
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(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: HORMA]
(5)
Family
:
HORMA
(5)
Homo sapiens (Human)
(5)
1a
HORMA-2vfxL01
L:12-191
1b
HORMA-2vfxL02
L:12-191
1c
HORMA-2vfxL03
L:12-191
1d
HORMA-2vfxL04
L:12-191
1e
HORMA-2vfxL05
L:12-191
1f
HORMA-2vfxL06
L:12-191
1g
HORMA-2vfxL07
L:12-191
1h
HORMA-2vfxL08
L:12-191
1i
HORMA-2vfxL09
L:12-191
1j
HORMA-2vfxL10
L:12-191
1k
HORMA-2vfxL11
L:12-191
1l
HORMA-2vfxL12
L:12-191
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