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2VFJ
Biol. Unit 1
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Asym.Unit (450 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (110 KB)
Biol.Unit 3 (114 KB)
Biol.Unit 4 (116 KB)
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(1)
Title
:
STRUCTURE OF THE A20 OVARIAN TUMOUR (OTU) DOMAIN
Authors
:
D. Komander, D. Barford
Date
:
04 Nov 07 (Deposition) - 04 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Phosphorylation, Cysteine Protease, Metal-Binding, Ovarian Tumour, Thiol Protease, Dna-Binding, Polymorphism, Lys63- Linked, Hydrolase, Cytoplasm, Ubiquitin, Zinc-Finger, Deubiquitinating Enzyme, Cytokine Signalling, Ubl Conjugation Pathway, Otu, Zinc, Nf-Kb, Nucleus, Protease, Apoptosis
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Reference
:
D. Komander, D. Barford
Structure Of The A20 Otu Domain And Mechanistic Insights Into Deubiquitination
Biochem. J. V. 409 77 2008
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Hetero Components
(0, 0)
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All Hetero Components
1a: MAGNESIUM ION (MGa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
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Sites
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_020447 (A125V, chain A, )
2: VAR_022143 (F127C, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020447
A
125
V
TNAP3_HUMAN
Polymorphism
5029941
A
A
125
V
2
UniProt
VAR_022143
F
127
C
TNAP3_HUMAN
Polymorphism
2230926
A
F
127
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: OTU (A:92-263)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OTU
PS50802
OTU domain profile.
TNAP3_HUMAN
92-263
1
A:92-263
-
-
-
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Exons
(0, 0)
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SCOP Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_OTU_2vfjD01 (D:98-257)
1b: PFAM_OTU_2vfjD02 (D:98-257)
1c: PFAM_OTU_2vfjD03 (D:98-257)
1d: PFAM_OTU_2vfjD04 (D:98-257)
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Clan
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Peptidase_CA
(169)
Family
:
OTU
(9)
Homo sapiens (Human)
(2)
1a
OTU-2vfjD01
D:98-257
1b
OTU-2vfjD02
D:98-257
1c
OTU-2vfjD03
D:98-257
1d
OTU-2vfjD04
D:98-257
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Asym.Unit (450 KB)
Header - Asym.Unit
Biol.Unit 1 (113 KB)
Header - Biol.Unit 1
Biol.Unit 2 (110 KB)
Header - Biol.Unit 2
Biol.Unit 3 (114 KB)
Header - Biol.Unit 3
Biol.Unit 4 (116 KB)
Header - Biol.Unit 4
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