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2VF8
Asym. Unit
Info
Asym.Unit (268 KB)
Biol.Unit 1 (258 KB)
Biol.Unit 2 (129 KB)
Biol.Unit 3 (135 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF UVRA2 FROM DEINOCOCCUS RADIODURANS
Authors
:
J. Timmins, E. Gordon, S. Caria, G. Leonard, M. S. Kuo, V. Monchois, S. Mcsweeney
Date
:
31 Oct 07 (Deposition) - 16 Dec 08 (Release) - 28 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Nucleotide-Binding, Zinc-Binding Domain, Sos Response, Metal-Binding, Excision Nuclease, Zinc-Finger, Atp-Binding, Dna-Binding, Dna Excision, Zinc, Cytoplasm, Dna Damage, Dna Repair, Abc Protein, Dna-Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Timmins, E. Gordon, S. Caria, G. Leonard, S. Acajjaoui, M. S. Kuo, V. Monchois, S. Mcsweeney
Structural And Mutational Analyses Of Deinococcus Radiodurans Uvra2 Provide Insight Into Dna Binding And Damage Recognition By Uvras.
Structure V. 17 547 2009
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
2a: PHOSPHATE ION (PO4a)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
4
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
PO4
1
Ligand/Ion
PHOSPHATE ION
3
SO4
8
Ligand/Ion
SULFATE ION
4
ZN
4
Ligand/Ion
ZINC ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:24 , ASN A:25 , VAL A:44 , SER A:45 , GLY A:46 , SER A:47 , GLY A:48 , LYS A:49 , SER A:50 , SER A:51 , ARG A:101 , GLN A:726 , GLU A:730
BINDING SITE FOR RESIDUE ADP A1843
02
AC2
SOFTWARE
TYR A:370 , ARG A:375 , ASN A:511 , ASN A:512 , GLY A:533 , SER A:534 , GLY A:535 , LYS A:536 , SER A:537 , THR A:538
BINDING SITE FOR RESIDUE ADP A1844
03
AC3
SOFTWARE
CYS A:151 , CYS A:154 , CYS A:287 , CYS A:290
BINDING SITE FOR RESIDUE ZN A1845
04
AC4
SOFTWARE
CYS A:641 , CYS A:644 , CYS A:667
BINDING SITE FOR RESIDUE ZN A1846
05
AC5
SOFTWARE
HIS B:24 , ASN B:25 , VAL B:44 , SER B:45 , GLY B:46 , SER B:47 , GLY B:48 , LYS B:49 , SER B:50 , SER B:51 , ARG B:101 , GLN B:726 , GLU B:730 , HOH B:2061 , HOH B:2062
BINDING SITE FOR RESIDUE ADP B1843
06
AC6
SOFTWARE
TYR B:370 , ARG B:375 , ASN B:511 , ASN B:512 , SER B:532 , GLY B:533 , SER B:534 , GLY B:535 , LYS B:536 , SER B:537 , THR B:538 , ASP B:568 , HIS B:569 , GLY B:810
BINDING SITE FOR RESIDUE ADP B1844
07
AC7
SOFTWARE
CYS B:151 , CYS B:154 , CYS B:287 , CYS B:290
BINDING SITE FOR RESIDUE ZN B1845
08
AC8
SOFTWARE
CYS B:641 , CYS B:644 , CYS B:664 , CYS B:667
BINDING SITE FOR RESIDUE ZN B1846
09
AC9
SOFTWARE
LEU A:76 , ARG B:121 , HOH B:2064
BINDING SITE FOR RESIDUE SO4 B1847
10
BC1
SOFTWARE
SER A:112 , SER A:117 , ARG A:121 , SER A:143 , ASN A:145 , HOH A:2037
BINDING SITE FOR RESIDUE SO4 A1847
11
BC2
SOFTWARE
MET A:247
BINDING SITE FOR RESIDUE SO4 A1849
12
BC3
SOFTWARE
GLY A:595 , ARG A:596 , THR A:597 , SER A:600
BINDING SITE FOR RESIDUE SO4 A1848
13
BC4
SOFTWARE
TYR B:130 , ILE B:136 , ARG B:342
BINDING SITE FOR RESIDUE SO4 B1848
14
BC5
SOFTWARE
LEU B:364 , LEU B:366 , GLY B:367 , LEU B:368 , GLY B:369 , TYR B:370
BINDING SITE FOR RESIDUE SO4 B1849
15
BC6
SOFTWARE
LYS B:32 , TRP B:449 , LYS B:474 , HIS B:475
BINDING SITE FOR RESIDUE SO4 B1850
16
BC7
SOFTWARE
GLY B:595 , ARG B:596 , THR B:597 , ARG B:599 , SER B:600 , HOH B:2065
BINDING SITE FOR RESIDUE SO4 B1851
17
BC8
SOFTWARE
SER B:50 , PHE B:54 , ARG B:101 , ASP B:406
BINDING SITE FOR RESIDUE PO4 B1852
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_ABC_tran_2vf8B01 (B:567-762)
1b: PFAM_ABC_tran_2vf8B02 (B:567-762)
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Clan
:
P-loop_NTPase
(1112)
Family
:
ABC_tran
(53)
Deinococcus radiodurans
(2)
1a
ABC_tran-2vf8B01
B:567-762
1b
ABC_tran-2vf8B02
B:567-762
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Asymmetric Unit 1
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Asym.Unit (268 KB)
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Biol.Unit 1 (258 KB)
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Biol.Unit 2 (129 KB)
Header - Biol.Unit 2
Biol.Unit 3 (135 KB)
Header - Biol.Unit 3
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