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2VER
Asym. Unit
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Asym.Unit (79 KB)
Biol.Unit 1 (76 KB)
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(1)
Title
:
STRUCTURAL MODEL FOR THE COMPLEX BETWEEN THE DR ADHESINS AND CARCINOEMBRYONIC ANTIGEN (CEA)
Authors
:
N. Korotkova, Y. Yang, I. Le Trong, E. Cota, B. Demeler, J. Marchant, W. R. E. Stenkamp, S. L. Moseley, S. Matthews
Date
:
26 Oct 07 (Deposition) - 08 Jan 08 (Release) - 18 May 11 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,N
Biol. Unit 1: A,N (1x)
Keywords
:
Membrane, Fimbrium, Gpi-Anchor, Lipoprotein, Immunoglobulin Domain, Cell Adhesion, Cell Projection
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Korotkova, Y. Yang, I. Le Trong, E. Cota, B. Demeler, J. Marchant, W. E. Thomas, R. E. Stenkamp, S. L. Moseley, S. Matthews
Binding Of Dr Adhesins Of Escherichia Coli To Carcinoembryonic Antigen Triggers Receptor Dissociation.
Mol. Microbiol. V. 67 420 2008
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: S-[(1-OXYL-2,2,5,5-TETRAMETHYL-2,5... (MTNa)
1b: S-[(1-OXYL-2,2,5,5-TETRAMETHYL-2,5... (MTNb)
1c: S-[(1-OXYL-2,2,5,5-TETRAMETHYL-2,5... (MTNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MTN
3
Ligand/Ion
S-[(1-OXYL-2,2,5,5-TETRAMETHYL-2,5-DIHYDRO-1H-PYRROL-3-YL)METHYL] METHANESULFONOTHIOATE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:72 , CYS N:39 , HIS N:89 , LEU N:95 , ASN N:97 , GLU N:99
BINDING SITE FOR RESIDUE MTN N1111
2
AC2
SOFTWARE
CYS N:43 , PRO N:59
BINDING SITE FOR RESIDUE MTN N1112
3
AC3
SOFTWARE
THR N:52 , CYS N:54
BINDING SITE FOR RESIDUE MTN N1113
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_AFAE3_ECOLX_001 (A22T, chain A, )
2: VAR_AFAE3_ECOLX_002 (N36D, chain A, )
3: VAR_061310 (I46V, chain N, )
4: VAR_061311 (V49A, chain N, )
5: VAR_056028 (Q103P, chain N, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_AFAE3_ECOLX_001
*
A
59
T
AFAE3_ECOLX
---
---
A
A
22
T
2
UniProt
VAR_AFAE3_ECOLX_002
*
N
73
D
AFAE3_ECOLX
---
---
A
N
36
D
3
UniProt
VAR_061310
I
80
V
CEAM5_HUMAN
Polymorphism
12971352
N
I
46
V
4
UniProt
VAR_061311
V
83
A
CEAM5_HUMAN
Polymorphism
28683503
N
V
49
A
5
UniProt
VAR_056028
Q
137
P
CEAM5_HUMAN
Polymorphism
3815780
N
Q
103
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(2, 2)
Info
All Exons
Exon 1.2b (N:1-108)
Exon 1.3 (N:108-110)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000221992
1a
ENSE00001824227
chr19:
42212504-42212714
211
CEAM5_HUMAN
1-22
22
0
-
-
1.2b
ENST00000221992
2b
ENSE00001673438
chr19:
42213599-42213958
360
CEAM5_HUMAN
22-142
121
1
N:1-108
108
1.3
ENST00000221992
3
ENSE00001745070
chr19:
42218890-42219168
279
CEAM5_HUMAN
142-235
94
1
N:108-110
3
1.4
ENST00000221992
4
ENSE00001616278
chr19:
42219569-42219823
255
CEAM5_HUMAN
235-320
86
0
-
-
1.5a
ENST00000221992
5a
ENSE00001769209
chr19:
42221374-42221652
279
CEAM5_HUMAN
320-413
94
0
-
-
1.6
ENST00000221992
6
ENSE00001779224
chr19:
42222047-42222301
255
CEAM5_HUMAN
413-498
86
0
-
-
1.7
ENST00000221992
7
ENSE00001731243
chr19:
42223849-42224127
279
CEAM5_HUMAN
498-591
94
0
-
-
1.8
ENST00000221992
8
ENSE00000842483
chr19:
42224842-42225096
255
CEAM5_HUMAN
591-676
86
0
-
-
1.9b
ENST00000221992
9b
ENSE00001053043
chr19:
42231154-42231272
119
CEAM5_HUMAN
676-702
27
0
-
-
1.10a
ENST00000221992
10a
ENSE00001942723
chr19:
42233104-42233718
615
CEAM5_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2vera1 (A:1-133)
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(
)
(
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Protein Domains
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(
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Dr-family adhesin
(11)
Protein domain
:
DraA/Afimbrial adhesin Afa-III
(11)
Escherichia coli [TaxId: 562]
(11)
1a
d2vera1
A:1-133
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2verA00 (A:1-143)
2a: CATH_2verN00 (N:1-110)
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)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Afimbrial adhesin afa-iii.
(12)
Escherichia coli. Organism_taxid: 562. Strain: dr/afa.
(1)
1a
2verA00
A:1-143
Homologous Superfamily
:
Immunoglobulins
(2282)
Escherichia coli. Organism_taxid: 562. Strain: dr/afa.
(1)
2a
2verN00
N:1-110
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Adhesin_Dr_2verA01 (A:1-123)
2a: PFAM_V_set_2verN01 (N:1-106)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Adhesin
(36)
Family
:
Adhesin_Dr
(9)
Escherichia coli
(9)
1a
Adhesin_Dr-2verA01
A:1-123
Clan
:
Ig
(577)
Family
:
V-set
(144)
Homo sapiens (Human)
(61)
2a
V-set-2verN01
N:1-106
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Asymmetric Unit 1
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Asym.Unit (79 KB)
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