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2VEE
Biol. Unit 4
Info
Asym.Unit (273 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (69 KB)
Biol.Unit 3 (70 KB)
Biol.Unit 4 (70 KB)
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(1)
Title
:
STRUCTURE OF PROTOGLOBIN FROM METHANOSARCINA ACETIVORANS C2A
Authors
:
M. Nardini, A. Pesce, L. Thijs, J. A. Saito, S. Dewilde, M. Alam, P. Ascenzi, M. Coletta, C. Ciaccio, L. Moens, M. Bolognesi
Date
:
22 Oct 07 (Deposition) - 22 Jan 08 (Release) - 11 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Hemoprotein Structure, Protein Matrix Tunnels, Protoglobin, Methanogenesis, Archaea Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Nardini, A. Pesce, L. Thijs, J. A. Saito, S. Dewilde, M. Alam, P. Ascenzi, M. Coletta, C. Ciaccio, L. Moens, M. Bolognesi
Archaeal Protoglobin Structure Indicates New Ligand Diffusion Paths And Modulation Of Haem- Reactivity.
Embo Rep. V. 9 157 2008
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
1f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
1g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
1h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
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1
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(2, 2)
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1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
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No.
Name
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Description
1
AC7
SOFTWARE
LEU G:70 , TYR G:73 , PHE G:74 , TYR G:85 , VAL G:89 , ARG G:92 , PHE G:93 , TRP G:96 , TYR G:112 , ARG G:119 , HIS G:120 , LYS G:125 , ASN G:126 , ILE G:137 , TYR G:141 , PHE G:145 , ILE G:149 , VAL G:182 , TRP G:185 , HOH G:2023 , HOH G:2024
BINDING SITE FOR RESIDUE HEM G1196
2
AC8
SOFTWARE
LEU H:70 , TYR H:73 , PHE H:74 , TYR H:85 , VAL H:89 , ARG H:92 , PHE H:93 , TRP H:96 , TYR H:112 , ARG H:119 , HIS H:120 , LYS H:125 , ASN H:126 , ILE H:137 , TYR H:141 , PHE H:145 , ILE H:149 , TRP H:185 , HOH H:2033 , HOH H:2034
BINDING SITE FOR RESIDUE HEM H1196
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SAPs(SNPs)/Variants
(0, 0)
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Protoglobin_2veeH01 (H:6-195)
1b: PFAM_Protoglobin_2veeH02 (H:6-195)
1c: PFAM_Protoglobin_2veeH03 (H:6-195)
1d: PFAM_Protoglobin_2veeH04 (H:6-195)
1e: PFAM_Protoglobin_2veeH05 (H:6-195)
1f: PFAM_Protoglobin_2veeH06 (H:6-195)
1g: PFAM_Protoglobin_2veeH07 (H:6-195)
1h: PFAM_Protoglobin_2veeH08 (H:6-195)
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Clan
:
no clan defined [family: Protoglobin]
(5)
Family
:
Protoglobin
(5)
Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
(5)
1a
Protoglobin-2veeH01
H:6-195
1b
Protoglobin-2veeH02
H:6-195
1c
Protoglobin-2veeH03
H:6-195
1d
Protoglobin-2veeH04
H:6-195
1e
Protoglobin-2veeH05
H:6-195
1f
Protoglobin-2veeH06
H:6-195
1g
Protoglobin-2veeH07
H:6-195
1h
Protoglobin-2veeH08
H:6-195
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Asymmetric Unit 1
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Asym.Unit (273 KB)
Header - Asym.Unit
Biol.Unit 1 (69 KB)
Header - Biol.Unit 1
Biol.Unit 2 (69 KB)
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Biol.Unit 3 (70 KB)
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Biol.Unit 4 (70 KB)
Header - Biol.Unit 4
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