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2VEE
Biol. Unit 2
Info
Asym.Unit (273 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (69 KB)
Biol.Unit 3 (70 KB)
Biol.Unit 4 (70 KB)
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(1)
Title
:
STRUCTURE OF PROTOGLOBIN FROM METHANOSARCINA ACETIVORANS C2A
Authors
:
M. Nardini, A. Pesce, L. Thijs, J. A. Saito, S. Dewilde, M. Alam, P. Ascenzi, M. Coletta, C. Ciaccio, L. Moens, M. Bolognesi
Date
:
22 Oct 07 (Deposition) - 22 Jan 08 (Release) - 11 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Hemoprotein Structure, Protein Matrix Tunnels, Protoglobin, Methanogenesis, Archaea Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Nardini, A. Pesce, L. Thijs, J. A. Saito, S. Dewilde, M. Alam, P. Ascenzi, M. Coletta, C. Ciaccio, L. Moens, M. Bolognesi
Archaeal Protoglobin Structure Indicates New Ligand Diffusion Paths And Modulation Of Haem- Reactivity.
Embo Rep. V. 9 157 2008
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
1f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
1g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
1h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
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No.
Name
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1
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(2, 2)
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1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
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No.
Name
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Residues
Description
1
AC2
SOFTWARE
LEU B:70 , TYR B:73 , PHE B:74 , TYR B:85 , VAL B:89 , ARG B:92 , PHE B:93 , TRP B:96 , TYR B:112 , ARG B:119 , HIS B:120 , LYS B:125 , ASN B:126 , ILE B:137 , TYR B:141 , PHE B:145 , ILE B:149 , VAL B:182 , TRP B:185 , HOH B:2012 , HOH B:2015 , HOH B:2029
BINDING SITE FOR RESIDUE HEM B1196
2
AC4
SOFTWARE
LEU D:70 , TYR D:73 , PHE D:74 , TYR D:85 , VAL D:89 , ARG D:92 , PHE D:93 , TRP D:96 , TYR D:112 , ARG D:119 , HIS D:120 , LYS D:125 , ASN D:126 , ILE D:137 , TYR D:141 , PHE D:145 , ILE D:149 , VAL D:182 , TRP D:185 , HOH D:2020 , HOH D:2029
BINDING SITE FOR RESIDUE HEM D1196
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SAPs(SNPs)/Variants
(0, 0)
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Protoglobin_2veeH01 (H:6-195)
1b: PFAM_Protoglobin_2veeH02 (H:6-195)
1c: PFAM_Protoglobin_2veeH03 (H:6-195)
1d: PFAM_Protoglobin_2veeH04 (H:6-195)
1e: PFAM_Protoglobin_2veeH05 (H:6-195)
1f: PFAM_Protoglobin_2veeH06 (H:6-195)
1g: PFAM_Protoglobin_2veeH07 (H:6-195)
1h: PFAM_Protoglobin_2veeH08 (H:6-195)
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Clan
:
no clan defined [family: Protoglobin]
(5)
Family
:
Protoglobin
(5)
Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
(5)
1a
Protoglobin-2veeH01
H:6-195
1b
Protoglobin-2veeH02
H:6-195
1c
Protoglobin-2veeH03
H:6-195
1d
Protoglobin-2veeH04
H:6-195
1e
Protoglobin-2veeH05
H:6-195
1f
Protoglobin-2veeH06
H:6-195
1g
Protoglobin-2veeH07
H:6-195
1h
Protoglobin-2veeH08
H:6-195
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Asym.Unit (273 KB)
Header - Asym.Unit
Biol.Unit 1 (69 KB)
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Biol.Unit 2 (69 KB)
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Biol.Unit 3 (70 KB)
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