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2VEB
Asym. Unit
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Asym.Unit (83 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
HIGH RESOLUTION STRUCTURE OF PROTOGLOBIN FROM METHANOSARCINA ACETIVORANS C2A
Authors
:
M. Nardini, A. Pesce, L. Thijs, J. A. Saito, S. Dewilde, M. Alam, P. Ascenzi, M. Coletta, C. Ciaccio, L. Moens, M. Bolognesi
Date
:
18 Oct 07 (Deposition) - 22 Jan 08 (Release) - 22 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hemoprotein Structure, Protein Matrix Tunnels, Protoglobin, Methanogenesis, Archaea Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Nardini, A. Pesce, L. Thijs, J. A. Saito, S. Dewilde, M. Alam, P. Ascenzi, M. Coletta, C. Ciaccio, L. Moens, M. Bolognesi
Archaeal Protoglobin Structure Indicates New Ligand Diffusion Paths And Modulation Of Haem- Reactivity.
Embo Rep. V. 9 157 2008
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3a: OXYGEN MOLECULE (OXYa)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
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No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
OXY
1
Ligand/Ion
OXYGEN MOLECULE
4
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(5, 5)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:70 , TYR A:73 , PHE A:74 , TYR A:85 , VAL A:89 , ARG A:92 , PHE A:93 , TRP A:96 , TYR A:112 , ARG A:119 , HIS A:120 , LYS A:125 , ASN A:126 , ILE A:137 , TYR A:141 , PHE A:145 , VAL A:182 , TRP A:185 , OXY A:350 , HOH A:2205 , HOH A:2262 , HOH A:2263 , HOH A:2264
BINDING SITE FOR RESIDUE HEM A 200
2
AC2
SOFTWARE
GLY A:12 , GLU A:13 , THR A:14 , GLU A:15 , ASN A:16 , ALA A:108 , ASP A:111 , HOH A:2265
BINDING SITE FOR RESIDUE PO4 A 202
3
AC3
SOFTWARE
TYR A:72 , VAL A:134 , PRO A:135 , ASN A:136 , HOH A:2136 , HOH A:2226 , HOH A:2266 , HOH A:2267
BINDING SITE FOR RESIDUE PO4 A 203
4
AC4
SOFTWARE
PRO A:164 , GLU A:165 , TYR A:187 , PRO A:188 , VAL A:190 , LYS A:191 , TYR A:192 , HOH A:2268 , HOH A:2269
BINDING SITE FOR RESIDUE GOL A 204
5
AC5
SOFTWARE
PHE A:93 , HEM A:200
BINDING SITE FOR RESIDUE OXY A 350
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Protoglobin_2vebA01 (A:6-195)
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Clans
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(
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Clan
:
no clan defined [family: Protoglobin]
(5)
Family
:
Protoglobin
(5)
Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
(5)
1a
Protoglobin-2vebA01
A:6-195
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Chain A
Asymmetric Unit 1
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