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2VDH
Asym. Unit
Info
Asym.Unit (820 KB)
Biol.Unit 1 (803 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH A LARGE-SUBUNIT C172S MUTATION
Authors
:
M. -J. Garcia-Murria, S. Karkehabadi, J. Marin-Navarro, S. Satagopan, I. Andersson, R. J. Spreitzer, J. Moreno
Date
:
09 Oct 07 (Deposition) - 04 Nov 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P (1x)
Keywords
:
Vicinal Cysteines, Co2/O2 Specificity, Photosynthesis, Transit Peptide, Photorespiration, Metal-Binding, Hydroxylation, Oxidoreductase, Methylation, Chloroplast, Calvin Cycle, Monooxygenase, Lyase, Rubisco, Plastid, Magnesium, Acetylation, Carbon Dioxide Fixation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. -J. Garcia-Murria, S. Karkehabadi, J. Marin-Navarro, S. Satagopan, I. Andersson, R. J. Spreitzer, J. Moreno
Structural And Functional Consequences Of The Replacement Of Proximal Residues Cys-172 And Cys- 192 In The Large Subunit Of Ribulose 1, 5- Bisphosphate Carboxylase/Oxygenase From Chlamydomonas Reinhardtii
Biochem. J. V. 411 241 2008
[
close entry info
]
Hetero Components
(7, 121)
Info
All Hetero Components
1a: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPa)
1b: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPb)
1c: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPc)
1d: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPd)
1e: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPe)
1f: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPf)
1g: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPg)
1h: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPh)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2ak: 1,2-ETHANEDIOL (EDOak)
2al: 1,2-ETHANEDIOL (EDOal)
2am: 1,2-ETHANEDIOL (EDOam)
2an: 1,2-ETHANEDIOL (EDOan)
2ao: 1,2-ETHANEDIOL (EDOao)
2ap: 1,2-ETHANEDIOL (EDOap)
2aq: 1,2-ETHANEDIOL (EDOaq)
2ar: 1,2-ETHANEDIOL (EDOar)
2as: 1,2-ETHANEDIOL (EDOas)
2at: 1,2-ETHANEDIOL (EDOat)
2au: 1,2-ETHANEDIOL (EDOau)
2av: 1,2-ETHANEDIOL (EDOav)
2aw: 1,2-ETHANEDIOL (EDOaw)
2ax: 1,2-ETHANEDIOL (EDOax)
2ay: 1,2-ETHANEDIOL (EDOay)
2az: 1,2-ETHANEDIOL (EDOaz)
2b: 1,2-ETHANEDIOL (EDOb)
2ba: 1,2-ETHANEDIOL (EDOba)
2bb: 1,2-ETHANEDIOL (EDObb)
2bc: 1,2-ETHANEDIOL (EDObc)
2bd: 1,2-ETHANEDIOL (EDObd)
2be: 1,2-ETHANEDIOL (EDObe)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: 4-HYDROXYPROLINE (HYPa)
3b: 4-HYDROXYPROLINE (HYPb)
3c: 4-HYDROXYPROLINE (HYPc)
3d: 4-HYDROXYPROLINE (HYPd)
3e: 4-HYDROXYPROLINE (HYPe)
3f: 4-HYDROXYPROLINE (HYPf)
3g: 4-HYDROXYPROLINE (HYPg)
3h: 4-HYDROXYPROLINE (HYPh)
3i: 4-HYDROXYPROLINE (HYPi)
3j: 4-HYDROXYPROLINE (HYPj)
3k: 4-HYDROXYPROLINE (HYPk)
3l: 4-HYDROXYPROLINE (HYPl)
3m: 4-HYDROXYPROLINE (HYPm)
3n: 4-HYDROXYPROLINE (HYPn)
3o: 4-HYDROXYPROLINE (HYPo)
3p: 4-HYDROXYPROLINE (HYPp)
4a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
4b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
4c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
4d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
4e: LYSINE NZ-CARBOXYLIC ACID (KCXe)
4f: LYSINE NZ-CARBOXYLIC ACID (KCXf)
4g: LYSINE NZ-CARBOXYLIC ACID (KCXg)
4h: LYSINE NZ-CARBOXYLIC ACID (KCXh)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
5e: MAGNESIUM ION (MGe)
5f: MAGNESIUM ION (MGf)
5g: MAGNESIUM ION (MGg)
5h: MAGNESIUM ION (MGh)
6a: N-METHYL METHIONINE (MMEa)
6b: N-METHYL METHIONINE (MMEb)
6c: N-METHYL METHIONINE (MMEc)
6d: N-METHYL METHIONINE (MMEd)
6e: N-METHYL METHIONINE (MMEe)
6f: N-METHYL METHIONINE (MMEf)
6g: N-METHYL METHIONINE (MMEg)
6h: N-METHYL METHIONINE (MMEh)
7a: S-METHYLCYSTEINE (SMCa)
7b: S-METHYLCYSTEINE (SMCb)
7c: S-METHYLCYSTEINE (SMCc)
7d: S-METHYLCYSTEINE (SMCd)
7e: S-METHYLCYSTEINE (SMCe)
7f: S-METHYLCYSTEINE (SMCf)
7g: S-METHYLCYSTEINE (SMCg)
7h: S-METHYLCYSTEINE (SMCh)
7i: S-METHYLCYSTEINE (SMCi)
7j: S-METHYLCYSTEINE (SMCj)
7k: S-METHYLCYSTEINE (SMCk)
7l: S-METHYLCYSTEINE (SMCl)
7m: S-METHYLCYSTEINE (SMCm)
7n: S-METHYLCYSTEINE (SMCn)
7o: S-METHYLCYSTEINE (SMCo)
7p: S-METHYLCYSTEINE (SMCp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAP
8
Ligand/Ion
2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2
EDO
57
Ligand/Ion
1,2-ETHANEDIOL
3
HYP
16
Mod. Amino Acid
4-HYDROXYPROLINE
4
KCX
8
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
5
MG
8
Ligand/Ion
MAGNESIUM ION
6
MME
8
Mod. Amino Acid
N-METHYL METHIONINE
7
SMC
16
Mod. Amino Acid
S-METHYLCYSTEINE
[
close Hetero Component info
]
Sites
(73, 73)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , CAP A:1477
BINDING SITE FOR RESIDUE MG A1476
02
AC2
SOFTWARE
THR A:173 , LYS A:175 , LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , MG A:1476 , HOH A:2138 , HOH A:2139 , HOH A:2166 , HOH A:2167 , HOH A:2168 , HOH A:2169 , GLU B:60 , THR B:65 , TRP B:66 , ASN B:123 , HOH B:2021 , HOH B:2054
BINDING SITE FOR RESIDUE CAP A1477
03
AC3
SOFTWARE
KCX B:201 , ASP B:203 , GLU B:204 , CAP B:1477
BINDING SITE FOR RESIDUE MG B1476
04
AC4
SOFTWARE
GLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , HOH A:2017 , HOH A:2046 , THR B:173 , LYS B:175 , LYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , HIS B:294 , ARG B:295 , HIS B:327 , LYS B:334 , LEU B:335 , SER B:379 , GLY B:380 , GLY B:381 , GLY B:403 , GLY B:404 , MG B:1476 , HOH B:2079 , HOH B:2122 , HOH B:2124 , HOH B:2155 , HOH B:2157 , HOH B:2186 , HOH B:2187 , HOH B:2188
BINDING SITE FOR RESIDUE CAP B1477
05
AC5
SOFTWARE
LYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , CAP C:1477
BINDING SITE FOR RESIDUE MG C1476
06
AC6
SOFTWARE
THR C:173 , LYS C:175 , LYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , HIS C:294 , ARG C:295 , HIS C:327 , LYS C:334 , LEU C:335 , SER C:379 , GLY C:380 , GLY C:381 , GLY C:403 , GLY C:404 , MG C:1476 , HOH C:2062 , HOH C:2063 , HOH C:2131 , HOH C:2139 , HOH C:2154 , HOH C:2155 , HOH C:2156 , GLU D:60 , THR D:65 , TRP D:66 , ASN D:123
BINDING SITE FOR RESIDUE CAP C1477
07
AC7
SOFTWARE
LYS D:177 , KCX D:201 , ASP D:203 , GLU D:204 , CAP D:1477
BINDING SITE FOR RESIDUE MG D1476
08
AC8
SOFTWARE
GLU C:60 , THR C:65 , TRP C:66 , ASN C:123 , THR D:173 , LYS D:175 , LYS D:177 , KCX D:201 , ASP D:203 , GLU D:204 , HIS D:294 , ARG D:295 , HIS D:327 , LYS D:334 , LEU D:335 , SER D:379 , GLY D:380 , GLY D:381 , GLY D:403 , GLY D:404 , MG D:1476 , HOH D:2060 , HOH D:2134 , HOH D:2135 , HOH D:2141 , HOH D:2167 , HOH D:2168
BINDING SITE FOR RESIDUE CAP D1477
09
AC9
SOFTWARE
LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , CAP E:1477
BINDING SITE FOR RESIDUE MG E1476
10
BC1
SOFTWARE
THR E:173 , LYS E:175 , LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , MG E:1476 , HOH E:2140 , HOH E:2173 , HOH E:2174 , HOH E:2175 , HOH E:2176 , GLU F:60 , THR F:65 , TRP F:66 , ASN F:123 , HOH F:2022
BINDING SITE FOR RESIDUE CAP E1477
11
BC2
SOFTWARE
LYS F:177 , KCX F:201 , ASP F:203 , GLU F:204 , CAP F:1477
BINDING SITE FOR RESIDUE MG F1476
12
BC3
SOFTWARE
GLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , HOH E:2025 , THR F:173 , LYS F:175 , LYS F:177 , KCX F:201 , ASP F:203 , GLU F:204 , HIS F:294 , ARG F:295 , HIS F:327 , LYS F:334 , LEU F:335 , SER F:379 , GLY F:380 , GLY F:381 , GLY F:403 , GLY F:404 , MG F:1476 , HOH F:2071 , HOH F:2146 , HOH F:2171 , HOH F:2172 , HOH F:2173 , HOH F:2174
BINDING SITE FOR RESIDUE CAP F1477
13
BC4
SOFTWARE
LYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , CAP G:1477
BINDING SITE FOR RESIDUE MG G1476
14
BC5
SOFTWARE
THR G:173 , LYS G:175 , LYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , HIS G:294 , ARG G:295 , HIS G:327 , LYS G:334 , LEU G:335 , SER G:379 , GLY G:380 , GLY G:381 , GLY G:403 , GLY G:404 , MG G:1476 , HOH G:2073 , HOH G:2116 , HOH G:2149 , HOH G:2174 , HOH G:2175 , HOH G:2176 , GLU H:60 , THR H:65 , TRP H:66 , ASN H:123 , HOH H:2023 , HOH H:2056
BINDING SITE FOR RESIDUE CAP G1477
15
BC6
SOFTWARE
LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , CAP H:1477
BINDING SITE FOR RESIDUE MG H1476
16
BC7
SOFTWARE
GLU G:60 , THR G:65 , TRP G:66 , ASN G:123 , HOH G:2022 , HOH G:2049 , THR H:173 , LYS H:175 , LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , HIS H:294 , ARG H:295 , HIS H:327 , LYS H:334 , LEU H:335 , SER H:379 , GLY H:380 , GLY H:381 , GLY H:403 , GLY H:404 , MG H:1476 , HOH H:2156 , HOH H:2166 , HOH H:2181 , HOH H:2182 , HOH H:2183 , HOH H:2184
BINDING SITE FOR RESIDUE CAP H1477
17
BC8
SOFTWARE
THR A:65 , THR A:67 , THR A:68 , VAL A:69 , ASP A:72 , HOH A:2022 , HOH A:2170 , HOH A:2171
BINDING SITE FOR RESIDUE EDO A1478
18
BC9
SOFTWARE
LYS A:18 , THR A:65 , TRP A:66 , THR A:67 , THR A:68 , HOH A:2006 , HOH A:2171
BINDING SITE FOR RESIDUE EDO A1479
19
CC1
SOFTWARE
GLU A:52 , HOH B:2192
BINDING SITE FOR RESIDUE EDO A1480
20
CC2
SOFTWARE
PHE A:311 , GLU A:336 , GLY A:337 , PHE A:345 , ASP A:473 , HOH A:2172 , HOH A:2173
BINDING SITE FOR RESIDUE EDO A1481
21
CC3
SOFTWARE
TYR H:24 , THR H:68 , VAL H:69 , ASP H:72 , HOH H:2185 , HOH H:2186
BINDING SITE FOR RESIDUE EDO H1478
22
CC4
SOFTWARE
GLY H:16 , LYS H:18 , THR H:65 , TRP H:66 , THR H:67 , THR H:68 , HOH H:2187
BINDING SITE FOR RESIDUE EDO H1479
23
CC5
SOFTWARE
GLU H:52
BINDING SITE FOR RESIDUE EDO H1480
24
CC6
SOFTWARE
LYS H:466 , PHE H:467 , GLU H:468 , PHE H:469 , HOH H:2188
BINDING SITE FOR RESIDUE EDO H1481
25
CC7
SOFTWARE
ARG H:295 , GLU H:336 , PHE H:345 , ASP H:473
BINDING SITE FOR RESIDUE EDO H1482
26
CC8
SOFTWARE
TYR G:24 , THR G:68 , VAL G:69 , ASP G:72 , HOH G:2030 , HOH G:2177 , HOH G:2178
BINDING SITE FOR RESIDUE EDO G1478
27
CC9
SOFTWARE
LYS G:18 , THR G:65 , TRP G:66 , THR G:67 , THR G:68 , HOH G:2178 , HOH G:2179
BINDING SITE FOR RESIDUE EDO G1479
28
DC1
SOFTWARE
LYS A:466 , PHE A:467 , GLU A:468 , PHE A:469 , HOH A:2174
BINDING SITE FOR RESIDUE EDO A1482
29
DC2
SOFTWARE
ARG G:295 , SER G:328 , GLY G:329 , GLU G:336 , PHE G:345 , HOH G:2134
BINDING SITE FOR RESIDUE EDO G1480
30
DC3
SOFTWARE
TYR A:226 , LYS A:227 , LYS O:49 , GLU O:55 , ASP O:69
BINDING SITE FOR RESIDUE EDO O1141
31
DC4
SOFTWARE
GLY O:37 , TRP O:38 , ILE O:39 , PHE O:81 , GLY O:82
BINDING SITE FOR RESIDUE EDO O1142
32
DC5
SOFTWARE
LEU E:270 , HOH E:2177 , HOH E:2178 , LEU F:270
BINDING SITE FOR RESIDUE EDO E1478
33
DC6
SOFTWARE
TYR F:24 , THR F:68 , VAL F:69 , ASP F:72 , HOH F:2023 , HOH F:2028 , HOH F:2175
BINDING SITE FOR RESIDUE EDO F1478
34
DC7
SOFTWARE
GLY F:16 , VAL F:17 , LYS F:18 , THR F:65 , TRP F:66 , THR F:67 , THR F:68 , HOH F:2023 , HOH F:2176
BINDING SITE FOR RESIDUE EDO F1479
35
DC8
SOFTWARE
LYS F:466 , GLU F:468 , PHE F:469
BINDING SITE FOR RESIDUE EDO F1480
36
DC9
SOFTWARE
ARG F:295 , SER F:328 , GLU F:336 , ASP F:473 , HOH F:2177
BINDING SITE FOR RESIDUE EDO F1481
37
EC1
SOFTWARE
TYR C:24 , THR C:68 , VAL C:69 , ASP C:72 , HOH C:2018 , HOH C:2020 , HOH C:2027
BINDING SITE FOR RESIDUE EDO C1478
38
EC2
SOFTWARE
VAL C:17 , LYS C:18 , TRP C:66 , THR C:67 , THR C:68 , HOH C:2018 , HOH C:2157
BINDING SITE FOR RESIDUE EDO C1479
39
EC3
SOFTWARE
GLY K:37 , TRP K:38 , ILE K:39 , PHE K:81 , GLY K:82 , CYS K:83
BINDING SITE FOR RESIDUE EDO K1141
40
EC4
SOFTWARE
TYR B:24 , THR B:68 , VAL B:69 , ASP B:72 , HOH B:2189 , HOH B:2190
BINDING SITE FOR RESIDUE EDO B1478
41
EC5
SOFTWARE
VAL B:17 , LYS B:18 , THR B:65 , TRP B:66 , THR B:67 , THR B:68 , HOH B:2007 , HOH B:2190
BINDING SITE FOR RESIDUE EDO B1479
42
EC6
SOFTWARE
HOH A:2174 , GLU B:52 , ALA B:129
BINDING SITE FOR RESIDUE EDO B1480
43
EC7
SOFTWARE
GLU C:52 , PHE D:469
BINDING SITE FOR RESIDUE EDO C1480
44
EC8
SOFTWARE
LYS H:227 , LYS J:49 , GLU J:55 , ASP J:69 , HOH J:2019
BINDING SITE FOR RESIDUE EDO J1141
45
EC9
SOFTWARE
LEU C:270 , HOH C:2159 , LEU D:270 , HOH D:2096
BINDING SITE FOR RESIDUE EDO C1481
46
FC1
SOFTWARE
LEU A:270 , HOH A:2175 , HOH A:2176 , LEU B:270
BINDING SITE FOR RESIDUE EDO A1483
47
FC2
SOFTWARE
GLY D:16 , LYS D:18 , TRP D:66 , THR D:67 , THR D:68 , EDO D:1481 , HOH D:2016 , HOH D:2169
BINDING SITE FOR RESIDUE EDO D1478
48
FC3
SOFTWARE
TYR D:20 , GLU D:52
BINDING SITE FOR RESIDUE EDO D1479
49
FC4
SOFTWARE
LYS D:466 , PHE D:467 , GLU D:468 , PHE D:469 , HOH D:2170
BINDING SITE FOR RESIDUE EDO D1480
50
FC5
SOFTWARE
TYR E:24 , THR E:68 , VAL E:69 , ASP E:72 , EDO E:1480 , HOH E:2029 , HOH E:2035
BINDING SITE FOR RESIDUE EDO E1479
51
FC6
SOFTWARE
LYS E:18 , TYR E:20 , THR E:65 , TRP E:66 , THR E:67 , THR E:68 , EDO E:1479
BINDING SITE FOR RESIDUE EDO E1480
52
FC7
SOFTWARE
TYR E:20 , GLU E:52
BINDING SITE FOR RESIDUE EDO E1481
53
FC8
SOFTWARE
LYS E:466 , GLU E:468 , PHE E:469
BINDING SITE FOR RESIDUE EDO E1482
54
FC9
SOFTWARE
ARG E:295 , GLU E:336 , PHE E:345 , ASP E:473 , HOH E:2122 , HOH E:2180
BINDING SITE FOR RESIDUE EDO E1483
55
GC1
SOFTWARE
LYS C:466 , GLU C:468 , PHE C:469
BINDING SITE FOR RESIDUE EDO C1482
56
GC2
SOFTWARE
GLY M:37 , TRP M:38 , ILE M:39 , GLY M:82
BINDING SITE FOR RESIDUE EDO M1141
57
GC3
SOFTWARE
ARG C:295 , HIS C:298 , PHE C:345 , ASP C:473 , HOH C:2106
BINDING SITE FOR RESIDUE EDO C1483
58
GC4
SOFTWARE
GLU G:52 , ALA G:129 , HOH H:2188
BINDING SITE FOR RESIDUE EDO G1481
59
GC5
SOFTWARE
LYS G:466 , PHE G:467 , GLU G:468 , PHE G:469 , HOH G:2180
BINDING SITE FOR RESIDUE EDO G1482
60
GC6
SOFTWARE
LEU G:270 , LEU H:270 , HOH H:2189 , HOH H:2190
BINDING SITE FOR RESIDUE EDO H1483
61
GC7
SOFTWARE
TYR C:226 , LYS I:49 , GLU I:55 , SER I:56 , ASP I:69
BINDING SITE FOR RESIDUE EDO I1141
62
GC8
SOFTWARE
LYS K:49 , GLU K:55 , ASN K:70 , HOH K:2022
BINDING SITE FOR RESIDUE EDO K1142
63
GC9
SOFTWARE
TYR G:226 , HOH G:2093 , LYS M:49 , GLU M:55 , HOH M:2030
BINDING SITE FOR RESIDUE EDO M1142
64
HC1
SOFTWARE
LYS B:466 , PHE B:467 , GLU B:468 , HOH B:2192
BINDING SITE FOR RESIDUE EDO B1481
65
HC2
SOFTWARE
ARG B:295 , GLY B:337 , ASP B:473
BINDING SITE FOR RESIDUE EDO B1482
66
HC3
SOFTWARE
TYR D:24 , GLY D:64 , THR D:68 , VAL D:69 , ASP D:72 , LEU D:77 , EDO D:1478 , HOH D:2016 , HOH D:2018 , HOH D:2020
BINDING SITE FOR RESIDUE EDO D1481
67
HC4
SOFTWARE
ARG D:295 , GLU D:336 , ASP D:473 , HOH D:2171
BINDING SITE FOR RESIDUE EDO D1482
68
HC5
SOFTWARE
TYR B:226 , LYS B:227 , LYS L:49 , GLU L:55 , HOH L:2024
BINDING SITE FOR RESIDUE EDO L1141
69
HC6
SOFTWARE
GLY J:37 , TRP J:38 , ILE J:39 , PHE J:81 , GLY J:82
BINDING SITE FOR RESIDUE EDO J1142
70
HC7
SOFTWARE
GLU F:52
BINDING SITE FOR RESIDUE EDO F1482
71
HC8
SOFTWARE
LYS D:227 , LYS N:49 , GLU N:55 , ASP N:69 , HOH N:2028 , HOH N:2029
BINDING SITE FOR RESIDUE EDO N1141
72
HC9
SOFTWARE
ILE N:39 , GLY N:82 , CYS N:83
BINDING SITE FOR RESIDUE EDO N1142
73
IC1
SOFTWARE
TYR F:226 , LYS F:227 , ALA F:230 , LYS P:49 , GLU P:55 , HOH P:2027
BINDING SITE FOR RESIDUE EDO F1483
[
close Site info
]
SAPs(SNPs)/Variants
(1, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_RBL_CHLRE_001 (P46P, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_RBL_CHLRE_001
*
L
46
P
RBL_CHLRE
---
---
A/B/C/D/E/F/G/H
P
46
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: RUBISCO_LARGE (A:196-204,B:196-204,C:196-204,D:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RUBISCO_LARGE
PS00157
Ribulose bisphosphate carboxylase large chain active site.
RBL_CHLRE
196-204
8
A:196-204
B:196-204
C:196-204
D:196-204
E:196-204
F:196-204
G:196-204
H:196-204
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d2vdha1 (A:11-150)
1b: SCOP_d2vdhb1 (B:8-150)
1c: SCOP_d2vdhc1 (C:9-150)
1d: SCOP_d2vdhd1 (D:11-150)
1e: SCOP_d2vdhe1 (E:11-150)
1f: SCOP_d2vdhf1 (F:9-150)
1g: SCOP_d2vdhg1 (G:9-150)
1h: SCOP_d2vdhh1 (H:11-150)
2a: SCOP_d2vdhi_ (I:)
2b: SCOP_d2vdhj_ (J:)
2c: SCOP_d2vdhk_ (K:)
2d: SCOP_d2vdhl_ (L:)
2e: SCOP_d2vdhm_ (M:)
2f: SCOP_d2vdhn_ (N:)
2g: SCOP_d2vdho_ (O:)
2h: SCOP_d2vdhp_ (P:)
3a: SCOP_d2vdha2 (A:151-475)
3b: SCOP_d2vdhb2 (B:151-475)
3c: SCOP_d2vdhc2 (C:151-475)
3d: SCOP_d2vdhd2 (D:151-475)
3e: SCOP_d2vdhe2 (E:151-475)
3f: SCOP_d2vdhf2 (F:151-475)
3g: SCOP_d2vdhg2 (G:151-475)
3h: SCOP_d2vdhh2 (H:151-475)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RuBisCO, large subunit, small (N-terminal) domain
(66)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(9)
1a
d2vdha1
A:11-150
1b
d2vdhb1
B:8-150
1c
d2vdhc1
C:9-150
1d
d2vdhd1
D:11-150
1e
d2vdhe1
E:11-150
1f
d2vdhf1
F:9-150
1g
d2vdhg1
G:9-150
1h
d2vdhh1
H:11-150
Fold
:
RuBisCO, small subunit
(44)
Superfamily
:
RuBisCO, small subunit
(44)
Family
:
RuBisCO, small subunit
(44)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(28)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(6)
2a
d2vdhi_
I:
2b
d2vdhj_
J:
2c
d2vdhk_
K:
2d
d2vdhl_
L:
2e
d2vdhm_
M:
2f
d2vdhn_
N:
2g
d2vdho_
O:
2h
d2vdhp_
P:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
RuBisCo, C-terminal domain
(66)
Family
:
RuBisCo, large subunit, C-terminal domain
(56)
Protein domain
:
automated matches
(16)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(9)
3a
d2vdha2
A:151-475
3b
d2vdhb2
B:151-475
3c
d2vdhc2
C:151-475
3d
d2vdhd2
D:151-475
3e
d2vdhe2
E:151-475
3f
d2vdhf2
F:151-475
3g
d2vdhg2
G:151-475
3h
d2vdhh2
H:151-475
[
close SCOP info
]
CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_2vdhA01 (A:22-148)
1b: CATH_2vdhB01 (B:22-148)
1c: CATH_2vdhC01 (C:22-148)
1d: CATH_2vdhD01 (D:22-148)
1e: CATH_2vdhE01 (E:22-148)
1f: CATH_2vdhF01 (F:22-148)
1g: CATH_2vdhG01 (G:22-148)
1h: CATH_2vdhH01 (H:22-148)
2a: CATH_2vdhI00 (I:2-140)
2b: CATH_2vdhJ00 (J:2-140)
2c: CATH_2vdhK00 (K:2-140)
2d: CATH_2vdhL00 (L:2-140)
2e: CATH_2vdhM00 (M:2-140)
2f: CATH_2vdhN00 (N:2-140)
2g: CATH_2vdhO00 (O:2-140)
2h: CATH_2vdhP00 (P:2-140)
3a: CATH_2vdhA02 (A:149-462)
3b: CATH_2vdhB02 (B:149-462)
3c: CATH_2vdhC02 (C:149-462)
3d: CATH_2vdhD02 (D:149-462)
3e: CATH_2vdhE02 (E:149-462)
3f: CATH_2vdhF02 (F:149-462)
3g: CATH_2vdhG02 (G:149-462)
3h: CATH_2vdhH02 (H:149-462)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.150, no name defined]
(49)
Chlamydomonas reinhardtii. Organism_taxid: 3055. Strain: 18-7g.
(2)
1a
2vdhA01
A:22-148
1b
2vdhB01
B:22-148
1c
2vdhC01
C:22-148
1d
2vdhD01
D:22-148
1e
2vdhE01
E:22-148
1f
2vdhF01
F:22-148
1g
2vdhG01
G:22-148
1h
2vdhH01
H:22-148
Topology
:
Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
(42)
Homologous Superfamily
:
[code=3.30.190.10, no name defined]
(35)
Chlamydomonas reinhardtii. Organism_taxid: 3055. Strain: 18-7g.
(2)
2a
2vdhI00
I:2-140
2b
2vdhJ00
J:2-140
2c
2vdhK00
K:2-140
2d
2vdhL00
L:2-140
2e
2vdhM00
M:2-140
2f
2vdhN00
N:2-140
2g
2vdhO00
O:2-140
2h
2vdhP00
P:2-140
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Rubisco
(49)
Chlamydomonas reinhardtii. Organism_taxid: 3055. Strain: 18-7g.
(2)
3a
2vdhA02
A:149-462
3b
2vdhB02
B:149-462
3c
2vdhC02
C:149-462
3d
2vdhD02
D:149-462
3e
2vdhE02
E:149-462
3f
2vdhF02
F:149-462
3g
2vdhG02
G:149-462
3h
2vdhH02
H:149-462
[
close CATH info
]
Pfam Domains
(3, 24)
Info
all PFAM domains
1a: PFAM_RuBisCO_large_2vdhH01 (H:154-462)
1b: PFAM_RuBisCO_large_2vdhH02 (H:154-462)
1c: PFAM_RuBisCO_large_2vdhH03 (H:154-462)
1d: PFAM_RuBisCO_large_2vdhH04 (H:154-462)
1e: PFAM_RuBisCO_large_2vdhH05 (H:154-462)
1f: PFAM_RuBisCO_large_2vdhH06 (H:154-462)
1g: PFAM_RuBisCO_large_2vdhH07 (H:154-462)
1h: PFAM_RuBisCO_large_2vdhH08 (H:154-462)
2a: PFAM_RuBisCO_large_N_2vdhH09 (H:21-146)
2b: PFAM_RuBisCO_large_N_2vdhH10 (H:21-146)
2c: PFAM_RuBisCO_large_N_2vdhH11 (H:21-146)
2d: PFAM_RuBisCO_large_N_2vdhH12 (H:21-146)
2e: PFAM_RuBisCO_large_N_2vdhH13 (H:21-146)
2f: PFAM_RuBisCO_large_N_2vdhH14 (H:21-146)
2g: PFAM_RuBisCO_large_N_2vdhH15 (H:21-146)
2h: PFAM_RuBisCO_large_N_2vdhH16 (H:21-146)
3a: PFAM_RuBisCO_small_2vdhP01 (P:11-127)
3b: PFAM_RuBisCO_small_2vdhP02 (P:11-127)
3c: PFAM_RuBisCO_small_2vdhP03 (P:11-127)
3d: PFAM_RuBisCO_small_2vdhP04 (P:11-127)
3e: PFAM_RuBisCO_small_2vdhP05 (P:11-127)
3f: PFAM_RuBisCO_small_2vdhP06 (P:11-127)
3g: PFAM_RuBisCO_small_2vdhP07 (P:11-127)
3h: PFAM_RuBisCO_small_2vdhP08 (P:11-127)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: RuBisCO_large]
(36)
Family
:
RuBisCO_large
(36)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
1a
RuBisCO_large-2vdhH01
H:154-462
1b
RuBisCO_large-2vdhH02
H:154-462
1c
RuBisCO_large-2vdhH03
H:154-462
1d
RuBisCO_large-2vdhH04
H:154-462
1e
RuBisCO_large-2vdhH05
H:154-462
1f
RuBisCO_large-2vdhH06
H:154-462
1g
RuBisCO_large-2vdhH07
H:154-462
1h
RuBisCO_large-2vdhH08
H:154-462
Clan
:
no clan defined [family: RuBisCO_large_N]
(27)
Family
:
RuBisCO_large_N
(27)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
2a
RuBisCO_large_N-2vdhH09
H:21-146
2b
RuBisCO_large_N-2vdhH10
H:21-146
2c
RuBisCO_large_N-2vdhH11
H:21-146
2d
RuBisCO_large_N-2vdhH12
H:21-146
2e
RuBisCO_large_N-2vdhH13
H:21-146
2f
RuBisCO_large_N-2vdhH14
H:21-146
2g
RuBisCO_large_N-2vdhH15
H:21-146
2h
RuBisCO_large_N-2vdhH16
H:21-146
Clan
:
no clan defined [family: RuBisCO_small]
(23)
Family
:
RuBisCO_small
(23)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
3a
RuBisCO_small-2vdhP01
P:11-127
3b
RuBisCO_small-2vdhP02
P:11-127
3c
RuBisCO_small-2vdhP03
P:11-127
3d
RuBisCO_small-2vdhP04
P:11-127
3e
RuBisCO_small-2vdhP05
P:11-127
3f
RuBisCO_small-2vdhP06
P:11-127
3g
RuBisCO_small-2vdhP07
P:11-127
3h
RuBisCO_small-2vdhP08
P:11-127
[
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]
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