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2VCY
Asym. Unit
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Asym.Unit (117 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 2-ENOYL THIOESTER REDUCTASE OF HUMAN FAS II
Authors
:
A. M. Haapalainen, R. Pudas, O. S. Smart, R. K. Wierenga
Date
:
28 Sep 07 (Deposition) - 03 Jun 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.41
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nadp, Polymorphism, Mitochondrion, Oxidoreductase, Fatty Acid Biosynthesis, Enoyl Thioester Reductase, Lipid Synthesis, Transit Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. J. Chen, R. Pudas, S. Sharma, O. S. Smart, A. H. Juffer, J. K. Hiltunen, R. K. Wierenga, A. M. Haapalainen
Structural Enzymological Studies Of 2-Enoyl Thioester Reductase Of The Human Mitochondrial Fas Ii Pathway: New Insights Into Its Substrate Recognition Properties.
J. Mol. Biol. V. 379 830 2008
[
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Hetero Components
(1, 11)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
11
Ligand/Ion
SULFATE ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:256 , HOH A:2147 , HOH A:2148 , HOH A:2149
BINDING SITE FOR RESIDUE SO4 A1374
02
AC2
SOFTWARE
ARG A:308 , HOH A:2069 , HOH B:2100
BINDING SITE FOR RESIDUE SO4 A1375
03
AC3
SOFTWARE
ARG A:139 , HOH A:2047 , HOH A:2150 , HOH A:2151
BINDING SITE FOR RESIDUE SO4 A1376
04
AC4
SOFTWARE
ASN A:167 , SER A:194 , GLY A:195 , LYS A:368
BINDING SITE FOR RESIDUE SO4 A1377
05
AC5
SOFTWARE
ALA A:191 , SER A:192 , ASN A:193 , VAL A:215 , ARG A:216 , ARG A:218
BINDING SITE FOR RESIDUE SO4 A1378
06
AC6
SOFTWARE
ARG A:69 , PRO B:255 , GLN B:256 , HOH B:2087 , HOH B:2133
BINDING SITE FOR RESIDUE SO4 B1374
07
AC7
SOFTWARE
LYS A:306 , ARG B:308 , HOH B:2061 , HOH B:2134 , HOH B:2136
BINDING SITE FOR RESIDUE SO4 B1375
08
AC8
SOFTWARE
VAL B:103 , ARG B:139 , HOH B:2043
BINDING SITE FOR RESIDUE SO4 B1376
09
AC9
SOFTWARE
ALA A:289 , ARG B:274 , SER B:296
BINDING SITE FOR RESIDUE SO4 B1377
10
BC1
SOFTWARE
PRO B:84 , ASN B:167 , SER B:194 , GLY B:195 , VAL B:196 , LYS B:368
BINDING SITE FOR RESIDUE SO4 B1378
11
BC2
SOFTWARE
ALA B:191 , SER B:192 , ASN B:193 , SER B:194 , VAL B:215 , ARG B:216 , ARG B:218
BINDING SITE FOR RESIDUE SO4 B1379
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_027935 (L96L, chain A/B, )
2: VAR_055486 (R227K, chain A/B, )
3: VAR_055487 (R258L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_027935
F
96
L
MECR_HUMAN
Polymorphism
1128400
A/B
L
96
L
2
UniProt
VAR_055486
R
227
K
MECR_HUMAN
Polymorphism
11544658
A/B
R
227
K
3
UniProt
VAR_055487
R
258
L
MECR_HUMAN
Polymorphism
34835902
A/B
R
258
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(10, 20)
Info
All Exons
Exon 1.1b (A:42-59 | B:42-59)
Exon 1.7c (A:59-92 | B:59-92)
Exon 1.8c (A:92-136 | B:92-136)
Exon 1.9c (A:136-184 | B:136-184)
Exon 1.10d (A:184-218 | B:184-218)
Exon 1.11b (A:218-252 | B:218-252)
Exon 1.13a (A:253-277 | B:253-277)
Exon 1.14a (A:277-297 | B:277-297)
Exon 1.14f (A:298-322 | B:298-322)
Exon 1.15d (A:322-373 | B:322-373)
View:
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All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.7c
03: Boundary 1.7c/1.8c
04: Boundary 1.8c/1.9c
05: Boundary 1.9c/1.10d
06: Boundary 1.10d/1.11b
07: Boundary 1.11b/1.13a
08: Boundary 1.13a/1.14a
09: Boundary 1.14a/1.14f
10: Boundary 1.14f/1.15d
11: Boundary 1.15d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000263702
1b
ENSE00001897993
chr1:
29557444-29557243
202
MECR_HUMAN
1-59
59
2
A:42-59
B:42-59
18
18
1.7c
ENST00000263702
7c
ENSE00001694933
chr1:
29543197-29543100
98
MECR_HUMAN
59-92
34
2
A:59-92
B:59-92
34
34
1.8c
ENST00000263702
8c
ENSE00000956360
chr1:
29542648-29542517
132
MECR_HUMAN
92-136
45
2
A:92-136
B:92-136
45
45
1.9c
ENST00000263702
9c
ENSE00001065053
chr1:
29533417-29533274
144
MECR_HUMAN
136-184
49
2
A:136-184
B:136-184
49
49
1.10d
ENST00000263702
10d
ENSE00000956362
chr1:
29529745-29529643
103
MECR_HUMAN
184-218
35
2
A:184-218
B:184-218
35
35
1.11b
ENST00000263702
11b
ENSE00000956363
chr1:
29528557-29528455
103
MECR_HUMAN
218-252
35
2
A:218-252
B:218-252
35
35
1.13a
ENST00000263702
13a
ENSE00001757446
chr1:
29527101-29527028
74
MECR_HUMAN
253-277
25
2
A:253-277
B:253-277
25
25
1.14a
ENST00000263702
14a
ENSE00001681965
chr1:
29522770-29522710
61
MECR_HUMAN
277-297
21
2
A:277-297
B:277-297
21
21
1.14f
ENST00000263702
14f
ENSE00001694907
chr1:
29522525-29522453
73
MECR_HUMAN
298-322
25
2
A:298-322
B:298-322
25
25
1.15d
ENST00000263702
15d
ENSE00001829391
chr1:
29520691-29520329
363
MECR_HUMAN
322-373
52
2
A:322-373
B:322-373
52
52
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2vcyA02 (A:171-322)
1b: CATH_2vcyB02 (B:171-322)
View:
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Classes
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)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
2vcyA02
A:171-322
1b
2vcyB02
B:171-322
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_ADH_N_2vcyB01 (B:70-143)
1b: PFAM_ADH_N_2vcyB02 (B:70-143)
2a: PFAM_ADH_zinc_N_2vcyB03 (B:195-331)
2b: PFAM_ADH_zinc_N_2vcyB04 (B:195-331)
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Clans
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Families
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Organisms
(
)
(
)
Clan
:
GroES
(70)
Family
:
ADH_N
(62)
Homo sapiens (Human)
(18)
1a
ADH_N-2vcyB01
B:70-143
1b
ADH_N-2vcyB02
B:70-143
Clan
:
NADP_Rossmann
(1239)
Family
:
ADH_zinc_N
(75)
Homo sapiens (Human)
(24)
2a
ADH_zinc_N-2vcyB03
B:195-331
2b
ADH_zinc_N-2vcyB04
B:195-331
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