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2VCW
Biol. Unit 2
Info
Asym.Unit (138 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
COMPLEX STRUCTURE OF PROSTAGLANDIN D2 SYNTHASE AT 1.95A.
Authors
:
M. Hohwy, L. Spadola, B. Lundquist, K. Von Wachenfeldt, S. Persdotter, P. Hawtin, J. Dahmen, I. Groth-Clausen, R. H. A. Folmer, K. Edman
Date
:
27 Sep 07 (Deposition) - 15 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Prostaglandin Biosynthesis, Fatty Acid Biosynthesis, Prostaglandin D2 Synthase, Pgds, Asthma, Cytoplasm, Isomerase, Lipid Synthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hohwy, L. Spadola, B. Lundquist, P. Hawtin, J. Dahmen, I. Groth-Clausen, E. Nilsson, S. Persdotter, K. Von Wachenfeldt, R. H. A. Folmer, K. Edman
Novel Prostaglandin D Synthase Inhibitors Generated By Fragment-Based Drug Design.
J. Med. Chem. V. 51 2178 2008
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
1b: GLUTATHIONE (GSHb)
1c: GLUTATHIONE (GSHc)
2a: 1-PHENYL-1H-PYRAZOLE-4-CARBOXYLIC ... (ZZAa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GSH
1
Ligand/Ion
GLUTATHIONE
2
ZZA
-1
Ligand/Ion
1-PHENYL-1H-PYRAZOLE-4-CARBOXYLIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
ASP C:97 , TYR D:8 , ARG D:14 , TRP D:39 , LYS D:43 , LYS D:50 , ILE D:51 , PRO D:52 , GLN D:63 , SER D:64 , HOH D:2015
BINDING SITE FOR RESIDUE GSH D1200
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (C:2-79,D:2-79)
2: GST_CTER (C:81-199,D:81-199)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
HPGDS_HUMAN
2-79
2
-
-
C:2-79
D:2-79
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
HPGDS_HUMAN
81-199
2
-
-
C:81-199
D:81-199
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2vcwa1 (A:76-199)
1b: SCOP_d2vcwb1 (B:76-199)
1c: SCOP_d2vcwc1 (C:76-199)
1d: SCOP_d2vcwd1 (D:76-199)
2a: SCOP_d2vcwa2 (A:2-75)
2b: SCOP_d2vcwb2 (B:2-75)
2c: SCOP_d2vcwc2 (C:2-75)
2d: SCOP_d2vcwd2 (D:2-75)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
automated matches
(50)
Human (Homo sapiens) [TaxId: 9606]
(35)
1a
d2vcwa1
A:76-199
1b
d2vcwb1
B:76-199
1c
d2vcwc1
C:76-199
1d
d2vcwd1
D:76-199
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Human (Homo sapiens) [TaxId: 9606]
(87)
2a
d2vcwa2
A:2-75
2b
d2vcwb2
B:2-75
2c
d2vcwc2
C:2-75
2d
d2vcwd2
D:2-75
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2vcwA01 (A:2-75,A:184-199)
1b: CATH_2vcwB01 (B:2-75,B:184-199)
1c: CATH_2vcwC01 (C:2-75,C:184-199)
1d: CATH_2vcwD01 (D:2-75,D:184-199)
2a: CATH_2vcwA02 (A:76-183)
2b: CATH_2vcwB02 (B:76-183)
2c: CATH_2vcwC02 (C:76-183)
2d: CATH_2vcwD02 (D:76-183)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
2vcwA01
A:2-75,A:184-199
1b
2vcwB01
B:2-75,B:184-199
1c
2vcwC01
C:2-75,C:184-199
1d
2vcwD01
D:2-75,D:184-199
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
2vcwA02
A:76-183
2b
2vcwB02
B:76-183
2c
2vcwC02
C:76-183
2d
2vcwD02
D:76-183
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_GST_C_2vcwD01 (D:81-185)
1b: PFAM_GST_C_2vcwD02 (D:81-185)
1c: PFAM_GST_C_2vcwD03 (D:81-185)
1d: PFAM_GST_C_2vcwD04 (D:81-185)
2a: PFAM_GST_N_2vcwD05 (D:4-73)
2b: PFAM_GST_N_2vcwD06 (D:4-73)
2c: PFAM_GST_N_2vcwD07 (D:4-73)
2d: PFAM_GST_N_2vcwD08 (D:4-73)
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)
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)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Homo sapiens (Human)
(47)
1a
GST_C-2vcwD01
D:81-185
1b
GST_C-2vcwD02
D:81-185
1c
GST_C-2vcwD03
D:81-185
1d
GST_C-2vcwD04
D:81-185
Clan
:
Thioredoxin
(367)
Family
:
GST_N
(88)
Homo sapiens (Human)
(45)
2a
GST_N-2vcwD05
D:4-73
2b
GST_N-2vcwD06
D:4-73
2c
GST_N-2vcwD07
D:4-73
2d
GST_N-2vcwD08
D:4-73
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Asymmetric Unit 1
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Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (71 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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