PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2VCT
Biol. Unit 1
Info
Asym.Unit (326 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (87 KB)
Biol.Unit 3 (80 KB)
Biol.Unit 4 (80 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
GLUTATHIONE TRANSFERASE A2-2 IN COMPLEX WITH DELTA-4-ANDOSTRENE-3-17-DIONE
Authors
:
K. Tars, B. Olin, B. Mannervik
Date
:
27 Sep 07 (Deposition) - 28 Oct 08 (Release) - 09 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Andostrene Dione, Steroid Metabolism, Transferase, Glutathione
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tars, B. Olin, B. Mannervik
Structural Basis For Featuring Of Steroid Isomerase Activity In Alpha Class Glutathione Transferases.
J. Mol. Biol. V. 397 332 2010
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: 4-ANDROSTENE-3-17-DIONE (ASDa)
1b: 4-ANDROSTENE-3-17-DIONE (ASDb)
1c: 4-ANDROSTENE-3-17-DIONE (ASDc)
1d: 4-ANDROSTENE-3-17-DIONE (ASDd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ASD
2
Ligand/Ion
4-ANDROSTENE-3-17-DIONE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:9 , GLY A:14 , ARG A:15 , LEU A:107 , LEU A:108 , PHE A:111 , PHE A:222
BINDING SITE FOR RESIDUE ASD A1223
2
AC2
SOFTWARE
TYR B:9 , GLY B:14 , ARG B:15 , LEU B:107 , LEU B:108 , PHE B:222
BINDING SITE FOR RESIDUE ASD B1223
[
close Site info
]
SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_014495 (P110S, chain A/B, )
2: VAR_012205 (T112T, chain A/B, )
3: VAR_014496 (V149A, chain A/B, )
4: VAR_012206 (E210A, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014495
P
110
S
GSTA2_HUMAN
Polymorphism
2234951
A/B
P
110
S
2
UniProt
VAR_012205
S
112
T
GSTA2_HUMAN
Polymorphism
2180314
A/B
T
112
T
3
UniProt
VAR_014496
V
149
A
GSTA2_HUMAN
Polymorphism
2266631
A/B
V
149
A
4
UniProt
VAR_012206
E
210
A
GSTA2_HUMAN
Polymorphism
6577
A/B
E
210
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (A:3-83,B:3-83)
2: GST_CTER (A:85-207,B:85-207)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
GSTA2_HUMAN
3-83
2
A:3-83
B:3-83
-
-
-
-
-
-
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTA2_HUMAN
85-207
2
A:85-207
B:85-207
-
-
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2vcta2 (A:81-222)
1b: SCOP_d2vctb2 (B:81-222)
1c: SCOP_d2vctc2 (C:81-222)
1d: SCOP_d2vctd2 (D:81-222)
1e: SCOP_d2vcte2 (E:81-222)
1f: SCOP_d2vctf2 (F:81-222)
1g: SCOP_d2vctg2 (G:81-222)
1h: SCOP_d2vcth2 (H:81-222)
2a: SCOP_d2vcta1 (A:2-80)
2b: SCOP_d2vctb1 (B:2-80)
2c: SCOP_d2vctc1 (C:2-80)
2d: SCOP_d2vctd1 (D:2-80)
2e: SCOP_d2vcte1 (E:2-80)
2f: SCOP_d2vctf1 (F:2-80)
2g: SCOP_d2vctg1 (G:2-80)
2h: SCOP_d2vcth1 (H:2-80)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
automated matches
(50)
Human (Homo sapiens) [TaxId: 9606]
(35)
1a
d2vcta2
A:81-222
1b
d2vctb2
B:81-222
1c
d2vctc2
C:81-222
1d
d2vctd2
D:81-222
1e
d2vcte2
E:81-222
1f
d2vctf2
F:81-222
1g
d2vctg2
G:81-222
1h
d2vcth2
H:81-222
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Human (Homo sapiens) [TaxId: 9606]
(87)
2a
d2vcta1
A:2-80
2b
d2vctb1
B:2-80
2c
d2vctc1
C:2-80
2d
d2vctd1
D:2-80
2e
d2vcte1
E:2-80
2f
d2vctf1
F:2-80
2g
d2vctg1
G:2-80
2h
d2vcth1
H:2-80
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2vctA01 (A:2-81,A:191-209)
1b: CATH_2vctB01 (B:2-81,B:191-209)
1c: CATH_2vctC01 (C:2-81,C:191-209)
1d: CATH_2vctD01 (D:2-81,D:191-209)
1e: CATH_2vctE01 (E:2-81,E:191-209)
1f: CATH_2vctF01 (F:2-81,F:191-209)
1g: CATH_2vctG01 (G:2-81,G:191-209)
1h: CATH_2vctH01 (H:2-81,H:191-209)
2a: CATH_2vctA02 (A:82-190)
2b: CATH_2vctB02 (B:82-190)
2c: CATH_2vctC02 (C:82-190)
2d: CATH_2vctD02 (D:82-190)
2e: CATH_2vctE02 (E:82-190)
2f: CATH_2vctF02 (F:82-190)
2g: CATH_2vctG02 (G:82-190)
2h: CATH_2vctH02 (H:82-190)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
2vctA01
A:2-81,A:191-209
1b
2vctB01
B:2-81,B:191-209
1c
2vctC01
C:2-81,C:191-209
1d
2vctD01
D:2-81,D:191-209
1e
2vctE01
E:2-81,E:191-209
1f
2vctF01
F:2-81,F:191-209
1g
2vctG01
G:2-81,G:191-209
1h
2vctH01
H:2-81,H:191-209
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
2vctA02
A:82-190
2b
2vctB02
B:82-190
2c
2vctC02
C:82-190
2d
2vctD02
D:82-190
2e
2vctE02
E:82-190
2f
2vctF02
F:82-190
2g
2vctG02
G:82-190
2h
2vctH02
H:82-190
[
close CATH info
]
Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_GST_C_2vctH01 (H:99-192)
1b: PFAM_GST_C_2vctH02 (H:99-192)
1c: PFAM_GST_C_2vctH03 (H:99-192)
1d: PFAM_GST_C_2vctH04 (H:99-192)
1e: PFAM_GST_C_2vctH05 (H:99-192)
1f: PFAM_GST_C_2vctH06 (H:99-192)
1g: PFAM_GST_C_2vctH07 (H:99-192)
1h: PFAM_GST_C_2vctH08 (H:99-192)
2a: PFAM_GST_N_2vctH09 (H:5-77)
2b: PFAM_GST_N_2vctH10 (H:5-77)
2c: PFAM_GST_N_2vctH11 (H:5-77)
2d: PFAM_GST_N_2vctH12 (H:5-77)
2e: PFAM_GST_N_2vctH13 (H:5-77)
2f: PFAM_GST_N_2vctH14 (H:5-77)
2g: PFAM_GST_N_2vctH15 (H:5-77)
2h: PFAM_GST_N_2vctH16 (H:5-77)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Homo sapiens (Human)
(47)
1a
GST_C-2vctH01
H:99-192
1b
GST_C-2vctH02
H:99-192
1c
GST_C-2vctH03
H:99-192
1d
GST_C-2vctH04
H:99-192
1e
GST_C-2vctH05
H:99-192
1f
GST_C-2vctH06
H:99-192
1g
GST_C-2vctH07
H:99-192
1h
GST_C-2vctH08
H:99-192
Clan
:
Thioredoxin
(367)
Family
:
GST_N
(88)
Homo sapiens (Human)
(45)
2a
GST_N-2vctH09
H:5-77
2b
GST_N-2vctH10
H:5-77
2c
GST_N-2vctH11
H:5-77
2d
GST_N-2vctH12
H:5-77
2e
GST_N-2vctH13
H:5-77
2f
GST_N-2vctH14
H:5-77
2g
GST_N-2vctH15
H:5-77
2h
GST_N-2vctH16
H:5-77
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (326 KB)
Header - Asym.Unit
Biol.Unit 1 (88 KB)
Header - Biol.Unit 1
Biol.Unit 2 (87 KB)
Header - Biol.Unit 2
Biol.Unit 3 (80 KB)
Header - Biol.Unit 3
Biol.Unit 4 (80 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2VCT
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help