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2VCT
Asym. Unit
Info
Asym.Unit (326 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (87 KB)
Biol.Unit 3 (80 KB)
Biol.Unit 4 (80 KB)
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(1)
Title
:
GLUTATHIONE TRANSFERASE A2-2 IN COMPLEX WITH DELTA-4-ANDOSTRENE-3-17-DIONE
Authors
:
K. Tars, B. Olin, B. Mannervik
Date
:
27 Sep 07 (Deposition) - 28 Oct 08 (Release) - 09 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Andostrene Dione, Steroid Metabolism, Transferase, Glutathione
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tars, B. Olin, B. Mannervik
Structural Basis For Featuring Of Steroid Isomerase Activity In Alpha Class Glutathione Transferases.
J. Mol. Biol. V. 397 332 2010
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 4-ANDROSTENE-3-17-DIONE (ASDa)
1b: 4-ANDROSTENE-3-17-DIONE (ASDb)
1c: 4-ANDROSTENE-3-17-DIONE (ASDc)
1d: 4-ANDROSTENE-3-17-DIONE (ASDd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ASD
4
Ligand/Ion
4-ANDROSTENE-3-17-DIONE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:9 , GLY A:14 , ARG A:15 , LEU A:107 , LEU A:108 , PHE A:111 , PHE A:222
BINDING SITE FOR RESIDUE ASD A1223
2
AC2
SOFTWARE
TYR B:9 , GLY B:14 , ARG B:15 , LEU B:107 , LEU B:108 , PHE B:222
BINDING SITE FOR RESIDUE ASD B1223
3
AC3
SOFTWARE
TYR C:9 , GLY C:14 , ARG C:15 , LEU C:107 , LEU C:108 , PHE C:111 , PHE C:222
BINDING SITE FOR RESIDUE ASD C1223
4
AC4
SOFTWARE
TYR D:9 , ILE D:12 , GLY D:14 , ARG D:15 , PHE D:111 , PHE D:222
BINDING SITE FOR RESIDUE ASD D1223
[
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SAPs(SNPs)/Variants
(4, 32)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014495 (P110S, chain A/B/C/D/E/F/G/H, )
2: VAR_012205 (T112T, chain A/B/C/D/E/F/G/H, )
3: VAR_014496 (V149A, chain A/B/C/D/E/F/G/H, )
4: VAR_012206 (E210A, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014495
P
110
S
GSTA2_HUMAN
Polymorphism
2234951
A/B/C/D/E/F/G/H
P
110
S
2
UniProt
VAR_012205
S
112
T
GSTA2_HUMAN
Polymorphism
2180314
A/B/C/D/E/F/G/H
T
112
T
3
UniProt
VAR_014496
V
149
A
GSTA2_HUMAN
Polymorphism
2266631
A/B/C/D/E/F/G/H
V
149
A
4
UniProt
VAR_012206
E
210
A
GSTA2_HUMAN
Polymorphism
6577
A/B/C/D/E/F/G/H
E
210
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (A:3-83,B:3-83,C:3-83,D:3-83,E:3-83...)
2: GST_CTER (A:85-207,B:85-207,C:85-207,D:85-20...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
GSTA2_HUMAN
3-83
8
A:3-83
B:3-83
C:3-83
D:3-83
E:3-83
F:3-83
G:3-83
H:3-83
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTA2_HUMAN
85-207
8
A:85-207
B:85-207
C:85-207
D:85-207
E:85-207
F:85-207
G:85-207
H:85-207
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2vcta2 (A:81-222)
1b: SCOP_d2vctb2 (B:81-222)
1c: SCOP_d2vctc2 (C:81-222)
1d: SCOP_d2vctd2 (D:81-222)
1e: SCOP_d2vcte2 (E:81-222)
1f: SCOP_d2vctf2 (F:81-222)
1g: SCOP_d2vctg2 (G:81-222)
1h: SCOP_d2vcth2 (H:81-222)
2a: SCOP_d2vcta1 (A:2-80)
2b: SCOP_d2vctb1 (B:2-80)
2c: SCOP_d2vctc1 (C:2-80)
2d: SCOP_d2vctd1 (D:2-80)
2e: SCOP_d2vcte1 (E:2-80)
2f: SCOP_d2vctf1 (F:2-80)
2g: SCOP_d2vctg1 (G:2-80)
2h: SCOP_d2vcth1 (H:2-80)
View:
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
automated matches
(50)
Human (Homo sapiens) [TaxId: 9606]
(35)
1a
d2vcta2
A:81-222
1b
d2vctb2
B:81-222
1c
d2vctc2
C:81-222
1d
d2vctd2
D:81-222
1e
d2vcte2
E:81-222
1f
d2vctf2
F:81-222
1g
d2vctg2
G:81-222
1h
d2vcth2
H:81-222
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Human (Homo sapiens) [TaxId: 9606]
(87)
2a
d2vcta1
A:2-80
2b
d2vctb1
B:2-80
2c
d2vctc1
C:2-80
2d
d2vctd1
D:2-80
2e
d2vcte1
E:2-80
2f
d2vctf1
F:2-80
2g
d2vctg1
G:2-80
2h
d2vcth1
H:2-80
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2vctA01 (A:2-81,A:191-209)
1b: CATH_2vctB01 (B:2-81,B:191-209)
1c: CATH_2vctC01 (C:2-81,C:191-209)
1d: CATH_2vctD01 (D:2-81,D:191-209)
1e: CATH_2vctE01 (E:2-81,E:191-209)
1f: CATH_2vctF01 (F:2-81,F:191-209)
1g: CATH_2vctG01 (G:2-81,G:191-209)
1h: CATH_2vctH01 (H:2-81,H:191-209)
2a: CATH_2vctA02 (A:82-190)
2b: CATH_2vctB02 (B:82-190)
2c: CATH_2vctC02 (C:82-190)
2d: CATH_2vctD02 (D:82-190)
2e: CATH_2vctE02 (E:82-190)
2f: CATH_2vctF02 (F:82-190)
2g: CATH_2vctG02 (G:82-190)
2h: CATH_2vctH02 (H:82-190)
View:
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)
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)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
2vctA01
A:2-81,A:191-209
1b
2vctB01
B:2-81,B:191-209
1c
2vctC01
C:2-81,C:191-209
1d
2vctD01
D:2-81,D:191-209
1e
2vctE01
E:2-81,E:191-209
1f
2vctF01
F:2-81,F:191-209
1g
2vctG01
G:2-81,G:191-209
1h
2vctH01
H:2-81,H:191-209
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
2vctA02
A:82-190
2b
2vctB02
B:82-190
2c
2vctC02
C:82-190
2d
2vctD02
D:82-190
2e
2vctE02
E:82-190
2f
2vctF02
F:82-190
2g
2vctG02
G:82-190
2h
2vctH02
H:82-190
[
close CATH info
]
Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_GST_C_2vctH01 (H:99-192)
1b: PFAM_GST_C_2vctH02 (H:99-192)
1c: PFAM_GST_C_2vctH03 (H:99-192)
1d: PFAM_GST_C_2vctH04 (H:99-192)
1e: PFAM_GST_C_2vctH05 (H:99-192)
1f: PFAM_GST_C_2vctH06 (H:99-192)
1g: PFAM_GST_C_2vctH07 (H:99-192)
1h: PFAM_GST_C_2vctH08 (H:99-192)
2a: PFAM_GST_N_2vctH09 (H:5-77)
2b: PFAM_GST_N_2vctH10 (H:5-77)
2c: PFAM_GST_N_2vctH11 (H:5-77)
2d: PFAM_GST_N_2vctH12 (H:5-77)
2e: PFAM_GST_N_2vctH13 (H:5-77)
2f: PFAM_GST_N_2vctH14 (H:5-77)
2g: PFAM_GST_N_2vctH15 (H:5-77)
2h: PFAM_GST_N_2vctH16 (H:5-77)
View:
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Clans
(
)
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)
Families
(
)
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)
Organisms
(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Homo sapiens (Human)
(47)
1a
GST_C-2vctH01
H:99-192
1b
GST_C-2vctH02
H:99-192
1c
GST_C-2vctH03
H:99-192
1d
GST_C-2vctH04
H:99-192
1e
GST_C-2vctH05
H:99-192
1f
GST_C-2vctH06
H:99-192
1g
GST_C-2vctH07
H:99-192
1h
GST_C-2vctH08
H:99-192
Clan
:
Thioredoxin
(367)
Family
:
GST_N
(88)
Homo sapiens (Human)
(45)
2a
GST_N-2vctH09
H:5-77
2b
GST_N-2vctH10
H:5-77
2c
GST_N-2vctH11
H:5-77
2d
GST_N-2vctH12
H:5-77
2e
GST_N-2vctH13
H:5-77
2f
GST_N-2vctH14
H:5-77
2g
GST_N-2vctH15
H:5-77
2h
GST_N-2vctH16
H:5-77
[
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Asym.Unit (326 KB)
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