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2VCP
Asym. Unit
Info
Asym.Unit (125 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF N-WASP VC DOMAIN IN COMPLEX WITH SKELETAL ACTIN
Authors
:
J. F. Gaucher, D. Didry, M. F. Carlier
Date
:
26 Sep 07 (Deposition) - 04 Nov 08 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Keywords
:
Actin-Binding, Transcription, Muscle Protein, Nucleotide-Binding, Transcription Regulation, Methylation, Atp-Binding, Cytoskeleton, Phosphorylation, Structural Protein, Wh2, Wasp, Actin, Nucleus, Twinning
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. F. Gaucher, C. Mauge, D. Didry, B. Guichard, L. Renault, M. F. Carlie
Interactions Of Isolated C-Terminal Fragments Of Neural Wiskott-Aldrich Syndrome Protein (N-Wasp) With Actin And Arp2/3 Complex.
J. Biol. Chem. V. 287 34646 2012
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: 4-METHYL-HISTIDINE (HICa)
3b: 4-METHYL-HISTIDINE (HICb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
2
Ligand/Ion
CALCIUM ION
3
HIC
2
Mod. Amino Acid
4-METHYL-HISTIDINE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , ARG A:210 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , LYS A:336 , CA A:1377
BINDING SITE FOR RESIDUE ATP A1376
2
AC2
SOFTWARE
GLN A:137 , ATP A:1376
BINDING SITE FOR RESIDUE CA A1377
3
AC3
SOFTWARE
ASN B:12 , GLY B:13 , SER B:14 , GLY B:15 , LEU B:16 , LYS B:18 , GLY B:156 , ASP B:157 , GLY B:158 , VAL B:159 , GLY B:182 , ARG B:210 , GLU B:214 , GLY B:302 , THR B:303 , MET B:305 , TYR B:306 , LYS B:336 , CA B:1377
BINDING SITE FOR RESIDUE ATP B1376
4
AC4
SOFTWARE
ASN B:12 , LYS B:18 , GLN B:137 , ATP B:1376
BINDING SITE FOR RESIDUE CA B1377
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63,B:53-63)
2: ACTINS_ACT_LIKE (A:104-116,B:104-116)
3: ACTINS_2 (A:356-364,B:356-364)
4: WH2 (-|D:433-450,E:433-450)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
2
A:53-63
B:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
2
A:104-116
B:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
2
A:356-364
B:356-364
4
WH2
PS51082
WH2 domain profile.
WASL_HUMAN
405-422
433-450
2
-
D:433-450
E:433-450
[
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Exons
(2, 4)
Info
All Exons
Exon 1.10 (D:433-449 | E:433-449)
Exon 1.11 (D:450-452 | E:450-452)
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All Exon Boundaries
1: Boundary 1.9/1.10
2: Boundary 1.10/1.11
3: Boundary 1.11/1.12
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000223023
1a
ENSE00000882047
chr7:
123389121-123388672
450
WASL_HUMAN
1-39
39
0
-
-
1.3b
ENST00000223023
3b
ENSE00000719984
chr7:
123349277-123349143
135
WASL_HUMAN
40-84
45
0
-
-
1.4
ENST00000223023
4
ENSE00000719981
chr7:
123346880-123346794
87
WASL_HUMAN
85-113
29
0
-
-
1.5
ENST00000223023
5
ENSE00000719979
chr7:
123346427-123346331
97
WASL_HUMAN
114-146
33
0
-
-
1.6
ENST00000223023
6
ENSE00001011359
chr7:
123344711-123344688
24
WASL_HUMAN
146-154
9
0
-
-
1.7
ENST00000223023
7
ENSE00000719977
chr7:
123336801-123336633
169
WASL_HUMAN
154-210
57
0
-
-
1.8
ENST00000223023
8
ENSE00000719974
chr7:
123335919-123335877
43
WASL_HUMAN
210-224
15
0
-
-
1.9
ENST00000223023
9
ENSE00000719971
chr7:
123334922-123334769
154
WASL_HUMAN
225-276
52
0
-
-
1.10
ENST00000223023
10
ENSE00000719967
chr7:
123332921-123332401
521
WASL_HUMAN
276-449
174
2
D:433-449
E:433-449
17
17
1.11
ENST00000223023
11
ENSE00000882046
chr7:
123329204-123329096
109
WASL_HUMAN
450-486
37
2
D:450-452
E:450-452
3
3
1.12
ENST00000223023
12
ENSE00001188527
chr7:
123324634-123321989
2646
WASL_HUMAN
486-505
20
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2vcpA01 (A:6-34,A:71-134,A:337-373)
1b: CATH_2vcpA03 (A:136-181,A:271-332)
1c: CATH_2vcpB03 (B:136-181,B:271-332)
1d: CATH_2vcpB01 (B:6-34,B:71-134,B:337-373)
2a: CATH_2vcpA04 (A:182-267)
2b: CATH_2vcpB04 (B:182-267)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Rabbit (Oryctolagus cuniculus)
(44)
1a
2vcpA01
A:6-34,A:71-134,A:337-373
1b
2vcpA03
A:136-181,A:271-332
1c
2vcpB03
B:136-181,B:271-332
1d
2vcpB01
B:6-34,B:71-134,B:337-373
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Rabbit (Oryctolagus cuniculus)
(44)
2a
2vcpA04
A:182-267
2b
2vcpB04
B:182-267
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Actin_2vcpB01 (B:5-375)
1b: PFAM_Actin_2vcpB02 (B:5-375)
2a: PFAM_WH2_2vcpE01 (E:433-452)
2b: PFAM_WH2_2vcpE02 (E:433-452)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Oryctolagus cuniculus (Rabbit)
(47)
1a
Actin-2vcpB01
B:5-375
1b
Actin-2vcpB02
B:5-375
Clan
:
no clan defined [family: WH2]
(3)
Family
:
WH2
(3)
Homo sapiens (Human)
(1)
2a
WH2-2vcpE01
E:433-452
2b
WH2-2vcpE02
E:433-452
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