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2VBA
Biol. Unit 1
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Asym.Unit (587 KB)
Biol.Unit 1 (293 KB)
Biol.Unit 2 (292 KB)
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(1)
Title
:
BETA-KETOACYL-ACP SYNTHASE I (KAS) FROM E. COLI WITH BOUND AMINO-THIAZOLE INHIBITOR
Authors
:
G. Pappenberger, T. Schulz-Gasch, J. Bailly, M. Hennig
Date
:
06 Sep 07 (Deposition) - 25 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.36
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Cytoplasm, Antibiotic, Transferase, Amino-Thiazole, Acyltransferase, Lipid Synthesis, Fatty Acid Synthesis, Fatty Acid Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Pappenberger, T. Schulz-Gasch, E. Kusznir, F. Mueller, M. Hennig
Structure-Assisted Discovery Of An Aminothiazole Derivative As A Lead Molecule For Inhibition Of Bacterial Fatty-Acid Synthesis.
Acta Crystallogr. , Sect. D V. 63 1208 2007
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 2-PHENYLAMINO-4-METHYL-5-ACETYL TH... (P4Ta)
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Label:
No.
Name
Count
Type
Full Name
1
P4T
1
Ligand/Ion
2-PHENYLAMINO-4-METHYL-5-ACETYL THIAZOLE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:162 , CYS A:163 , PHE A:201 , MET A:204 , PHE A:229 , THR A:302 , LEU A:335 , PHE A:392 , HOH A:2248 , HOH A:2316 , HOH A:2513 , HOH A:2623 , MET B:138
BINDING SITE FOR RESIDUE P4T A1405
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_FABB_ECOLI_001 (A4T, chain A/B, )
2: VAR_FABB_ECOLI_002 (S140F, chain A/B, )
3: VAR_FABB_ECOLI_003 (G299S, chain A/B, )
4: VAR_FABB_ECOLI_004 (A329V, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_FABB_ECOLI_001
*
A
4
T
FABB_ECOLI
---
---
A/B
A
4
T
2
UniProt
VAR_FABB_ECOLI_002
*
S
140
F
FABB_ECOLI
---
---
A/B
S
140
F
3
UniProt
VAR_FABB_ECOLI_003
*
G
299
S
FABB_ECOLI
---
---
A/B
G
299
S
4
UniProt
VAR_FABB_ECOLI_004
*
A
329
V
FABB_ECOLI
---
---
A/B
A
329
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: B_KETOACYL_SYNTHASE (A:154-170,B:154-170)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
B_KETOACYL_SYNTHASE
PS00606
Beta-ketoacyl synthases active site.
FABB_ECOLI
154-170
2
A:154-170
B:154-170
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2vbaa1 (A:1-253)
1b: SCOP_d2vbaa2 (A:254-404)
1c: SCOP_d2vbab1 (B:1-253)
1d: SCOP_d2vbab2 (B:254-404)
1e: SCOP_d2vbac1 (C:1-253)
1f: SCOP_d2vbac2 (C:254-406)
1g: SCOP_d2vbad1 (D:1-253)
1h: SCOP_d2vbad2 (D:254-404)
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Protein Domains
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)
Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Beta-ketoacyl-ACP synthase I
(17)
Escherichia coli [TaxId: 562]
(17)
1a
d2vbaa1
A:1-253
1b
d2vbaa2
A:254-404
1c
d2vbab1
B:1-253
1d
d2vbab2
B:254-404
1e
d2vbac1
C:1-253
1f
d2vbac2
C:254-406
1g
d2vbad1
D:1-253
1h
d2vbad2
D:254-404
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2vbaC02 (C:260-406)
1b: CATH_2vbaA02 (A:260-404)
1c: CATH_2vbaB02 (B:260-404)
1d: CATH_2vbaD02 (D:260-404)
1e: CATH_2vbaA01 (A:6-259)
1f: CATH_2vbaB01 (B:6-259)
1g: CATH_2vbaC01 (C:6-259)
1h: CATH_2vbaD01 (D:6-259)
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(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Escherichia coli. Organism_taxid: 562.
(23)
1a
2vbaC02
C:260-406
1b
2vbaA02
A:260-404
1c
2vbaB02
B:260-404
1d
2vbaD02
D:260-404
1e
2vbaA01
A:6-259
1f
2vbaB01
B:6-259
1g
2vbaC01
C:6-259
1h
2vbaD01
D:6-259
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Ketoacyl_synt_C_2vbaD01 (D:254-362)
1b: PFAM_Ketoacyl_synt_C_2vbaD02 (D:254-362)
1c: PFAM_Ketoacyl_synt_C_2vbaD03 (D:254-362)
1d: PFAM_Ketoacyl_synt_C_2vbaD04 (D:254-362)
2a: PFAM_ketoacyl_synt_2vbaD05 (D:1-246)
2b: PFAM_ketoacyl_synt_2vbaD06 (D:1-246)
2c: PFAM_ketoacyl_synt_2vbaD07 (D:1-246)
2d: PFAM_ketoacyl_synt_2vbaD08 (D:1-246)
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Clan
:
Thiolase
(72)
Family
:
Ketoacyl-synt_C
(19)
Escherichia coli (strain K12)
(4)
1a
Ketoacyl-synt_C-2vbaD01
D:254-362
1b
Ketoacyl-synt_C-2vbaD02
D:254-362
1c
Ketoacyl-synt_C-2vbaD03
D:254-362
1d
Ketoacyl-synt_C-2vbaD04
D:254-362
Family
:
ketoacyl-synt
(19)
Escherichia coli (strain K12)
(4)
2a
ketoacyl-synt-2vbaD05
D:1-246
2b
ketoacyl-synt-2vbaD06
D:1-246
2c
ketoacyl-synt-2vbaD07
D:1-246
2d
ketoacyl-synt-2vbaD08
D:1-246
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Asym.Unit (587 KB)
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