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Asym. Unit
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Asym.Unit (587 KB)
Biol.Unit 1 (293 KB)
Biol.Unit 2 (292 KB)
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(1)
Title
:
BETA-KETOACYL-ACP SYNTHASE I (KAS) FROM E. COLI WITH BOUND AMINO-THIAZOLE INHIBITOR
Authors
:
G. Pappenberger, T. Schulz-Gasch, J. Bailly, M. Hennig
Date
:
06 Sep 07 (Deposition) - 25 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.36
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Cytoplasm, Antibiotic, Transferase, Amino-Thiazole, Acyltransferase, Lipid Synthesis, Fatty Acid Synthesis, Fatty Acid Biosynthesis
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. Pappenberger, T. Schulz-Gasch, E. Kusznir, F. Mueller, M. Hennig
Structure-Assisted Discovery Of An Aminothiazole Derivative As A Lead Molecule For Inhibition Of Bacterial Fatty-Acid Synthesis.
Acta Crystallogr. , Sect. D V. 63 1208 2007
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 2-PHENYLAMINO-4-METHYL-5-ACETYL TH... (P4Ta)
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Label:
No.
Name
Count
Type
Full Name
1
P4T
1
Ligand/Ion
2-PHENYLAMINO-4-METHYL-5-ACETYL THIAZOLE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:162 , CYS A:163 , PHE A:201 , MET A:204 , PHE A:229 , THR A:302 , LEU A:335 , PHE A:392 , HOH A:2248 , HOH A:2316 , HOH A:2513 , HOH A:2623 , MET B:138
BINDING SITE FOR RESIDUE P4T A1405
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SAPs(SNPs)/Variants
(4, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_FABB_ECOLI_001 (A4T, chain A/B/C/D, )
2: VAR_FABB_ECOLI_002 (S140F, chain A/B/C/D, )
3: VAR_FABB_ECOLI_003 (G299S, chain A/B/C/D, )
4: VAR_FABB_ECOLI_004 (A329V, chain A/B/C/D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_FABB_ECOLI_001
*
A
4
T
FABB_ECOLI
---
---
A/B/C/D
A
4
T
2
UniProt
VAR_FABB_ECOLI_002
*
S
140
F
FABB_ECOLI
---
---
A/B/C/D
S
140
F
3
UniProt
VAR_FABB_ECOLI_003
*
G
299
S
FABB_ECOLI
---
---
A/B/C/D
G
299
S
4
UniProt
VAR_FABB_ECOLI_004
*
A
329
V
FABB_ECOLI
---
---
A/B/C/D
A
329
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: B_KETOACYL_SYNTHASE (A:154-170,B:154-170,C:154-170,D:15...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
B_KETOACYL_SYNTHASE
PS00606
Beta-ketoacyl synthases active site.
FABB_ECOLI
154-170
4
A:154-170
B:154-170
C:154-170
D:154-170
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2vbaa1 (A:1-253)
1b: SCOP_d2vbaa2 (A:254-404)
1c: SCOP_d2vbab1 (B:1-253)
1d: SCOP_d2vbab2 (B:254-404)
1e: SCOP_d2vbac1 (C:1-253)
1f: SCOP_d2vbac2 (C:254-406)
1g: SCOP_d2vbad1 (D:1-253)
1h: SCOP_d2vbad2 (D:254-404)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Beta-ketoacyl-ACP synthase I
(17)
Escherichia coli [TaxId: 562]
(17)
1a
d2vbaa1
A:1-253
1b
d2vbaa2
A:254-404
1c
d2vbab1
B:1-253
1d
d2vbab2
B:254-404
1e
d2vbac1
C:1-253
1f
d2vbac2
C:254-406
1g
d2vbad1
D:1-253
1h
d2vbad2
D:254-404
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2vbaC02 (C:260-406)
1b: CATH_2vbaA02 (A:260-404)
1c: CATH_2vbaB02 (B:260-404)
1d: CATH_2vbaD02 (D:260-404)
1e: CATH_2vbaA01 (A:6-259)
1f: CATH_2vbaB01 (B:6-259)
1g: CATH_2vbaC01 (C:6-259)
1h: CATH_2vbaD01 (D:6-259)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Escherichia coli. Organism_taxid: 562.
(23)
1a
2vbaC02
C:260-406
1b
2vbaA02
A:260-404
1c
2vbaB02
B:260-404
1d
2vbaD02
D:260-404
1e
2vbaA01
A:6-259
1f
2vbaB01
B:6-259
1g
2vbaC01
C:6-259
1h
2vbaD01
D:6-259
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Ketoacyl_synt_C_2vbaD01 (D:254-362)
1b: PFAM_Ketoacyl_synt_C_2vbaD02 (D:254-362)
1c: PFAM_Ketoacyl_synt_C_2vbaD03 (D:254-362)
1d: PFAM_Ketoacyl_synt_C_2vbaD04 (D:254-362)
2a: PFAM_ketoacyl_synt_2vbaD05 (D:1-246)
2b: PFAM_ketoacyl_synt_2vbaD06 (D:1-246)
2c: PFAM_ketoacyl_synt_2vbaD07 (D:1-246)
2d: PFAM_ketoacyl_synt_2vbaD08 (D:1-246)
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Clan
:
Thiolase
(72)
Family
:
Ketoacyl-synt_C
(19)
Escherichia coli (strain K12)
(4)
1a
Ketoacyl-synt_C-2vbaD01
D:254-362
1b
Ketoacyl-synt_C-2vbaD02
D:254-362
1c
Ketoacyl-synt_C-2vbaD03
D:254-362
1d
Ketoacyl-synt_C-2vbaD04
D:254-362
Family
:
ketoacyl-synt
(19)
Escherichia coli (strain K12)
(4)
2a
ketoacyl-synt-2vbaD05
D:1-246
2b
ketoacyl-synt-2vbaD06
D:1-246
2c
ketoacyl-synt-2vbaD07
D:1-246
2d
ketoacyl-synt-2vbaD08
D:1-246
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Asym.Unit (587 KB)
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