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2VB8
Biol. Unit 1
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Asym.Unit (302 KB)
Biol.Unit 1 (150 KB)
Biol.Unit 2 (151 KB)
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(1)
Title
:
BETA-KETOACYL-ACP SYNTHASE I (KAS) FROM E. COLI WITH BOUND INHIBITOR THIOLACTOMYCIN
Authors
:
G. Pappenberger, T. Schulz-Gasch, J. Bailly, M. Hennig
Date
:
06 Sep 07 (Deposition) - 25 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.52
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Cytoplasm, Antibiotic, Transferase, Thiolactomycin, Acyltransferase, Lipid Synthesis, Fatty Acid Synthesis, Fatty Acid Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Pappenberger, T. Schulz-Gasch, E. Kusznir, F. Mueller, M. Hennig
Structure-Assisted Discovery Of An Aminothiazole Derivative As A Lead Molecule For Inhibition Of Bacterial Fatty-Acid Synthesis.
Acta Crystallogr. , Sect. D V. 63 1208 2007
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: THIOLACTOMYCIN (TLMa)
2b: THIOLACTOMYCIN (TLMb)
2c: THIOLACTOMYCIN (TLMc)
2d: THIOLACTOMYCIN (TLMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
TLM
2
Ligand/Ion
THIOLACTOMYCIN
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:163 , PHE A:229 , MET A:269 , VAL A:270 , ALA A:271 , PRO A:272 , HIS A:298 , THR A:300 , HIS A:333 , PHE A:390 , GLY A:391 , PHE A:392 , GLY A:394 , HOH A:2679
BINDING SITE FOR RESIDUE TLM A1405
2
AC2
SOFTWARE
CYS B:163 , PHE B:229 , VAL B:270 , ALA B:271 , PRO B:272 , HIS B:298 , THR B:300 , HIS B:333 , PHE B:390 , GLY B:391 , GLY B:394 , HOH B:2667
BINDING SITE FOR RESIDUE TLM B1405
3
AC5
SOFTWARE
ARG A:27 , HIS A:352
BINDING SITE FOR RESIDUE CL A1406
4
AC6
SOFTWARE
ARG B:27 , HIS B:352
BINDING SITE FOR RESIDUE CL B1406
[
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_FABB_ECOLI_001 (A4T, chain A/B, )
2: VAR_FABB_ECOLI_002 (S140F, chain A/B, )
3: VAR_FABB_ECOLI_003 (G299S, chain A/B, )
4: VAR_FABB_ECOLI_004 (A329V, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_FABB_ECOLI_001
*
A
4
T
FABB_ECOLI
---
---
A/B
A
4
T
2
UniProt
VAR_FABB_ECOLI_002
*
S
140
F
FABB_ECOLI
---
---
A/B
S
140
F
3
UniProt
VAR_FABB_ECOLI_003
*
G
299
S
FABB_ECOLI
---
---
A/B
G
299
S
4
UniProt
VAR_FABB_ECOLI_004
*
A
329
V
FABB_ECOLI
---
---
A/B
A
329
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: B_KETOACYL_SYNTHASE (A:154-170,B:154-170)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
B_KETOACYL_SYNTHASE
PS00606
Beta-ketoacyl synthases active site.
FABB_ECOLI
154-170
2
A:154-170
B:154-170
-
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2vb8a1 (A:1-253)
1b: SCOP_d2vb8b1 (B:1-253)
1c: SCOP_d2vb8b2 (B:254-404)
1d: SCOP_d2vb8c1 (C:1-253)
1e: SCOP_d2vb8c2 (C:254-406)
1f: SCOP_d2vb8d1 (D:1-253)
1g: SCOP_d2vb8d2 (D:254-404)
1h: SCOP_d2vb8a2 (A:254-404)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Beta-ketoacyl-ACP synthase I
(17)
Escherichia coli [TaxId: 562]
(17)
1a
d2vb8a1
A:1-253
1b
d2vb8b1
B:1-253
1c
d2vb8b2
B:254-404
1d
d2vb8c1
C:1-253
1e
d2vb8c2
C:254-406
1f
d2vb8d1
D:1-253
1g
d2vb8d2
D:254-404
1h
d2vb8a2
A:254-404
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2vb8C02 (C:260-406)
1b: CATH_2vb8A02 (A:260-404)
1c: CATH_2vb8B02 (B:260-404)
1d: CATH_2vb8D02 (D:260-404)
1e: CATH_2vb8A01 (A:6-259)
1f: CATH_2vb8B01 (B:6-259)
1g: CATH_2vb8C01 (C:6-259)
1h: CATH_2vb8D01 (D:6-259)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Escherichia coli. Organism_taxid: 562.
(23)
1a
2vb8C02
C:260-406
1b
2vb8A02
A:260-404
1c
2vb8B02
B:260-404
1d
2vb8D02
D:260-404
1e
2vb8A01
A:6-259
1f
2vb8B01
B:6-259
1g
2vb8C01
C:6-259
1h
2vb8D01
D:6-259
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Ketoacyl_synt_C_2vb8D01 (D:254-362)
1b: PFAM_Ketoacyl_synt_C_2vb8D02 (D:254-362)
1c: PFAM_Ketoacyl_synt_C_2vb8D03 (D:254-362)
1d: PFAM_Ketoacyl_synt_C_2vb8D04 (D:254-362)
2a: PFAM_ketoacyl_synt_2vb8D05 (D:1-246)
2b: PFAM_ketoacyl_synt_2vb8D06 (D:1-246)
2c: PFAM_ketoacyl_synt_2vb8D07 (D:1-246)
2d: PFAM_ketoacyl_synt_2vb8D08 (D:1-246)
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Clans
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)
Organisms
(
)
(
)
Clan
:
Thiolase
(72)
Family
:
Ketoacyl-synt_C
(19)
Escherichia coli (strain K12)
(4)
1a
Ketoacyl-synt_C-2vb8D01
D:254-362
1b
Ketoacyl-synt_C-2vb8D02
D:254-362
1c
Ketoacyl-synt_C-2vb8D03
D:254-362
1d
Ketoacyl-synt_C-2vb8D04
D:254-362
Family
:
ketoacyl-synt
(19)
Escherichia coli (strain K12)
(4)
2a
ketoacyl-synt-2vb8D05
D:1-246
2b
ketoacyl-synt-2vb8D06
D:1-246
2c
ketoacyl-synt-2vb8D07
D:1-246
2d
ketoacyl-synt-2vb8D08
D:1-246
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Asym.Unit (302 KB)
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