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2VB7
Biol. Unit 1
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Asym.Unit (296 KB)
Biol.Unit 1 (147 KB)
Biol.Unit 2 (147 KB)
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(1)
Title
:
BETA-KETOACYL-ACP SYNTHASE I (KAS) FROM E. COLI, APO STRUCTURE AFTER SOAK IN PEG SOLUTION
Authors
:
G. Pappenberger, T. Schulz-Gasch, J. Bailly, M. Hennig
Date
:
06 Sep 07 (Deposition) - 25 Dec 07 (Release) - 05 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Fatty Acid Biosynthesis, Cytoplasm, Antibiotic, Transferase, Acyltransferase, Lipid Synthesis, Fatty Acid Synthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Pappenberger, T. Schulz-Gasch, E. Kusznir, F. Mueller, M. Hennig
Structure-Assisted Discovery Of An Aminothiazole Derivative As A Lead Molecule For Inhibition Of Bacterial Fatty-Acid Synthesis.
Acta Crystallogr. , Sect. D V. 63 1208 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_FABB_ECOLI_001 (A4T, chain A/B, )
2: VAR_FABB_ECOLI_002 (S140F, chain A/B, )
3: VAR_FABB_ECOLI_003 (G299S, chain A/B, )
4: VAR_FABB_ECOLI_004 (A329V, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_FABB_ECOLI_001
*
A
4
T
FABB_ECOLI
---
---
A/B
A
4
T
2
UniProt
VAR_FABB_ECOLI_002
*
S
140
F
FABB_ECOLI
---
---
A/B
S
140
F
3
UniProt
VAR_FABB_ECOLI_003
*
G
299
S
FABB_ECOLI
---
---
A/B
G
299
S
4
UniProt
VAR_FABB_ECOLI_004
*
A
329
V
FABB_ECOLI
---
---
A/B
A
329
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: B_KETOACYL_SYNTHASE (A:154-170,B:154-170)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
B_KETOACYL_SYNTHASE
PS00606
Beta-ketoacyl synthases active site.
FABB_ECOLI
154-170
2
A:154-170
B:154-170
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2vb7a1 (A:1-253)
1b: SCOP_d2vb7a2 (A:254-404)
1c: SCOP_d2vb7b1 (B:1-253)
1d: SCOP_d2vb7b2 (B:254-404)
1e: SCOP_d2vb7c1 (C:1-253)
1f: SCOP_d2vb7c2 (C:254-406)
1g: SCOP_d2vb7d1 (D:1-253)
1h: SCOP_d2vb7d2 (D:254-404)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Beta-ketoacyl-ACP synthase I
(17)
Escherichia coli [TaxId: 562]
(17)
1a
d2vb7a1
A:1-253
1b
d2vb7a2
A:254-404
1c
d2vb7b1
B:1-253
1d
d2vb7b2
B:254-404
1e
d2vb7c1
C:1-253
1f
d2vb7c2
C:254-406
1g
d2vb7d1
D:1-253
1h
d2vb7d2
D:254-404
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2vb7C02 (C:260-406)
1b: CATH_2vb7C01 (C:6-259)
1c: CATH_2vb7A02 (A:260-404)
1d: CATH_2vb7B02 (B:260-404)
1e: CATH_2vb7D02 (D:260-404)
1f: CATH_2vb7A01 (A:6-259)
1g: CATH_2vb7B01 (B:6-259)
1h: CATH_2vb7D01 (D:6-259)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Escherichia coli. Organism_taxid: 562.
(23)
1a
2vb7C02
C:260-406
1b
2vb7C01
C:6-259
1c
2vb7A02
A:260-404
1d
2vb7B02
B:260-404
1e
2vb7D02
D:260-404
1f
2vb7A01
A:6-259
1g
2vb7B01
B:6-259
1h
2vb7D01
D:6-259
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Ketoacyl_synt_C_2vb7D01 (D:254-362)
1b: PFAM_Ketoacyl_synt_C_2vb7D02 (D:254-362)
1c: PFAM_Ketoacyl_synt_C_2vb7D03 (D:254-362)
1d: PFAM_Ketoacyl_synt_C_2vb7D04 (D:254-362)
2a: PFAM_ketoacyl_synt_2vb7D05 (D:1-246)
2b: PFAM_ketoacyl_synt_2vb7D06 (D:1-246)
2c: PFAM_ketoacyl_synt_2vb7D07 (D:1-246)
2d: PFAM_ketoacyl_synt_2vb7D08 (D:1-246)
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Clan
:
Thiolase
(72)
Family
:
Ketoacyl-synt_C
(19)
Escherichia coli (strain K12)
(4)
1a
Ketoacyl-synt_C-2vb7D01
D:254-362
1b
Ketoacyl-synt_C-2vb7D02
D:254-362
1c
Ketoacyl-synt_C-2vb7D03
D:254-362
1d
Ketoacyl-synt_C-2vb7D04
D:254-362
Family
:
ketoacyl-synt
(19)
Escherichia coli (strain K12)
(4)
2a
ketoacyl-synt-2vb7D05
D:1-246
2b
ketoacyl-synt-2vb7D06
D:1-246
2c
ketoacyl-synt-2vb7D07
D:1-246
2d
ketoacyl-synt-2vb7D08
D:1-246
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Asym.Unit (296 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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