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2VAR
Biol. Unit 1
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Asym.Unit (170 KB)
Biol.Unit 1 (321 KB)
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Title
:
CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS 2-KETO-3-DEOXYGLUCONATE KINASE COMPLEXED WITH 2-KETO-3-DEOXYGLUCONATE
Authors
:
J. A. Potter, A. Theodossis, M. Kerou, H. J. Lamble, S. D. Bull, D. W. Hough, M. J. Danson, G. L. Taylor
Date
:
04 Sep 07 (Deposition) - 02 Oct 07 (Release) - 10 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Kinase, Transferase, Sulfolobus Solfataricus, Pfkb Family Carbohydrate Kinase, 2- Keto-3-Deoxygluconate Kinasekinase, 2- Keto-3-Deoxygluconate Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Potter, M. Kerou, H. J. Lamble, S. D. Bull, D. W. Hough, M. J. Danson, G. L. Taylor
The Structure Of Sulfolobus Solfataricus 2-Keto-3- Deoxygluconate Kinase.
Acta Crystallogr. , Sect. D V. 64 1283 2008
[
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
1c: ADENOSINE MONOPHOSPHATE (AMPc)
2a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2c: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPc)
3a: 3-DEOXY-ALPHA-D-ERYTHRO-HEX-2-ULOF... (KDFa)
3b: 3-DEOXY-ALPHA-D-ERYTHRO-HEX-2-ULOF... (KDFb)
3c: 3-DEOXY-ALPHA-D-ERYTHRO-HEX-2-ULOF... (KDFc)
4a: 2-KETO-3-DEOXYGLUCONATE (KDGa)
4b: 2-KETO-3-DEOXYGLUCONATE (KDGb)
4c: 2-KETO-3-DEOXYGLUCONATE (KDGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
6
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
ANP
6
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3
KDF
6
Ligand/Ion
3-DEOXY-ALPHA-D-ERYTHRO-HEX-2-ULOFURANOSONICACID
4
KDG
6
Ligand/Ion
2-KETO-3-DEOXYGLUCONATE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:11 , GLY A:34 , SER A:35 , TYR A:90 , LEU A:104 , TYR A:106 , ARG A:108 , ILE A:137 , ARG A:166 , GLY A:255 , ASP A:258 , ASP A:294 , KDF A:1314 , ANP A:1315
BINDING SITE FOR RESIDUE KDG A1313
02
AC2
SOFTWARE
LEU A:11 , ALA A:33 , GLY A:34 , SER A:35 , TYR A:90 , TYR A:106 , ARG A:108 , ILE A:137 , ARG A:166 , GLY A:255 , ASP A:258 , ASP A:294 , KDG A:1313 , ANP A:1315 , HOH A:2002
BINDING SITE FOR RESIDUE KDF A1314
03
AC3
SOFTWARE
ASN A:164 , ARG A:166 , LYS A:226 , GLY A:228 , SER A:229 , GLY A:231 , TYR A:246 , GLY A:255 , ALA A:256 , GLY A:257 , ASP A:258 , MET A:260 , ILE A:282 , SER A:285 , ILE A:289 , KDG A:1313 , KDF A:1314 , AMP A:1316 , HOH A:2137 , HOH A:2138 , HOH A:2139
BINDING SITE FOR RESIDUE ANP A1315
04
AC4
SOFTWARE
LYS A:226 , GLY A:228 , GLY A:231 , TYR A:246 , VAL A:250 , ALA A:256 , MET A:260 , ILE A:282 , SER A:285 , ILE A:289 , ANP A:1315 , HOH A:2048 , HOH A:2137 , HOH A:2139
BINDING SITE FOR RESIDUE AMP A1316
05
AC5
SOFTWARE
LEU B:11 , GLY B:34 , SER B:35 , ASN B:38 , TYR B:90 , LEU B:104 , TYR B:106 , ARG B:108 , ILE B:137 , ARG B:166 , GLY B:255 , ASP B:258 , ASP B:294 , KDF B:1314 , ANP B:1315 , HOH B:2004
BINDING SITE FOR RESIDUE KDG B1313
06
AC6
SOFTWARE
LEU B:11 , ALA B:33 , GLY B:34 , SER B:35 , ASN B:38 , TYR B:90 , LEU B:104 , TYR B:106 , ARG B:108 , ILE B:137 , ARG B:166 , GLY B:255 , ASP B:258 , ASP B:294 , KDG B:1313 , ANP B:1315 , HOH B:2004
BINDING SITE FOR RESIDUE KDF B1314
07
AC7
SOFTWARE
ASN B:164 , ARG B:166 , LYS B:226 , GLY B:228 , SER B:229 , GLY B:231 , ALA B:245 , TYR B:246 , PRO B:253 , GLY B:255 , ALA B:256 , GLY B:257 , ASP B:258 , MET B:260 , ILE B:282 , SER B:285 , ILE B:289 , KDG B:1313 , KDF B:1314 , AMP B:1316 , HOH B:2160 , HOH B:2161 , HOH B:2162 , HOH B:2163 , HOH B:2164
BINDING SITE FOR RESIDUE ANP B1315
08
AC8
SOFTWARE
LYS B:226 , GLY B:228 , GLY B:231 , TYR B:246 , VAL B:250 , ALA B:256 , MET B:260 , ILE B:282 , SER B:285 , ILE B:289 , ANP B:1315 , HOH B:2054 , HOH B:2163 , HOH B:2164
BINDING SITE FOR RESIDUE AMP B1316
09
AC9
SOFTWARE
LEU C:11 , GLY C:34 , SER C:35 , TYR C:90 , LEU C:104 , TYR C:106 , ARG C:108 , ILE C:137 , ARG C:166 , GLY C:255 , ASP C:258 , ASP C:294 , KDF C:1314 , ANP C:1315
BINDING SITE FOR RESIDUE KDG C1313
10
BC1
SOFTWARE
ALA C:33 , GLY C:34 , SER C:35 , ASN C:38 , TYR C:90 , LEU C:104 , TYR C:106 , ARG C:108 , ARG C:166 , GLY C:255 , ASP C:258 , ASP C:294 , KDG C:1313 , ANP C:1315
BINDING SITE FOR RESIDUE KDF C1314
11
BC2
SOFTWARE
ASN C:164 , ARG C:166 , LYS C:226 , GLY C:228 , GLY C:231 , TYR C:246 , GLY C:255 , ALA C:256 , GLY C:257 , ASP C:258 , MET C:260 , ILE C:282 , SER C:285 , ILE C:289 , KDG C:1313 , KDF C:1314 , AMP C:1316 , HOH C:2049 , HOH C:2153 , HOH C:2154
BINDING SITE FOR RESIDUE ANP C1315
12
BC3
SOFTWARE
LYS C:226 , GLY C:228 , SER C:229 , GLY C:231 , ALA C:245 , TYR C:246 , ALA C:256 , MET C:260 , ILE C:282 , SER C:285 , ILE C:289 , ANP C:1315 , HOH C:2153 , HOH C:2154
BINDING SITE FOR RESIDUE AMP C1316
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2vara_ (A:)
1b: SCOP_d2varb_ (B:)
1c: SCOP_d2varc_ (C:)
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribokinase-like
(226)
Superfamily
:
Ribokinase-like
(189)
Family
:
Ribokinase-like
(36)
Protein domain
:
automated matches
(3)
Sulfolobus solfataricus [TaxId: 2287]
(2)
1a
d2vara_
A:
1b
d2varb_
B:
1c
d2varc_
C:
[
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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