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2VAE
Asym. Unit
Info
Asym.Unit (342 KB)
Biol.Unit 1 (170 KB)
Biol.Unit 2 (171 KB)
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(1)
Title
:
FAST MATURING RED FLUORESCENT PROTEIN, DSRED.T4
Authors
:
D. E. Strongin, B. Bevis, N. Khuong, M. E. Downing, R. L. Strack, K. Sundaram, B. S. Glick, R. J. Keenan
Date
:
31 Aug 07 (Deposition) - 06 Nov 07 (Release) - 16 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.64
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Photoprotein, Fast Maturing, Fluorescent Protein, Dsred, Gfp-Like, Chromophore, Luminescence
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. E. Strongin, B. Bevis, N. Khuong, M. E. Downing, R. L. Strack, K. Sundaram, B. S. Glick, R. J. Keenan
Structural Rearrangements Near The Chromophore Influence The Maturation Speed And Brightness Of Dsred Variants.
Protein Eng. Des. Sel. V. 20 525 2007
[
close entry info
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Hetero Components
(2, 35)
Info
All Hetero Components
1a: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQa)
1b: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQb)
1c: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQc)
1d: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQd)
1e: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQe)
1f: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQf)
1g: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQg)
1h: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQh)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CRQ
8
Mod. Amino Acid
[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID
2
EDO
27
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:123 , GLU D:19 , GLY D:20 , SER D:21 , GLU D:26 , PHE D:124 , HOH D:2012
BINDING SITE FOR RESIDUE EDO D1226
02
AC2
SOFTWARE
LYS C:45 , SER C:203 , HIS C:204 , ASN C:205 , ILE C:210 , GLU C:212 , HOH C:2209
BINDING SITE FOR RESIDUE EDO C1226
03
AC3
SOFTWARE
PRO H:80 , GLY H:191 , TYR H:192 , HIS H:221 , HOH H:2212 , HOH H:2213
BINDING SITE FOR RESIDUE EDO H1226
04
AC4
SOFTWARE
ASP B:110 , LYS B:121 , LYS B:123 , HOH B:2222 , HOH B:2223 , GLU D:26
BINDING SITE FOR RESIDUE EDO B1226
05
AC5
SOFTWARE
GLU E:26 , ASP G:110 , LYS G:121 , LYS G:123 , HOH G:2219
BINDING SITE FOR RESIDUE EDO G1226
06
AC6
SOFTWARE
LYS A:123 , EDO A:1228 , GLU C:19 , GLY C:20 , SER C:21 , PHE C:124 , ILE C:125 , HOH C:2012
BINDING SITE FOR RESIDUE EDO C1227
07
AC7
SOFTWARE
THR F:108 , ASP F:110 , LYS F:121 , LYS F:123 , HOH F:2227 , HOH F:2228 , GLU H:26
BINDING SITE FOR RESIDUE EDO F1226
08
AC8
SOFTWARE
GLN A:109 , ASP A:110 , LYS A:121 , LYS A:123 , HOH A:2216 , GLU C:26
BINDING SITE FOR RESIDUE EDO A1226
09
AC9
SOFTWARE
LYS D:45 , SER D:203 , HIS D:204 , ILE D:210 , GLU D:212 , HOH D:2215 , HOH D:2234 , ASN F:205
BINDING SITE FOR RESIDUE EDO D1227
10
BC1
SOFTWARE
GLU B:26 , ASP D:110 , LYS D:121 , LYS D:123 , HOH D:2235
BINDING SITE FOR RESIDUE EDO D1228
11
BC2
SOFTWARE
GLU A:26 , THR C:108 , GLN C:109 , ASP C:110 , LYS C:121 , LYS C:123 , HOH C:2210
BINDING SITE FOR RESIDUE EDO C1228
12
BC3
SOFTWARE
THR E:108 , ASP E:110 , LYS E:121 , LYS E:123 , GLU G:26 , HOH G:2020
BINDING SITE FOR RESIDUE EDO E1226
13
BC4
SOFTWARE
GLY C:191 , TYR C:192 , HIS C:221 , HOH C:2211
BINDING SITE FOR RESIDUE EDO C1229
14
BC5
SOFTWARE
ASN D:205 , SER F:203 , HIS F:204 , ASN F:205 , ILE F:210 , GLU F:212
BINDING SITE FOR RESIDUE EDO F1227
15
BC6
SOFTWARE
ASN A:205 , LYS G:45 , SER G:203 , HIS G:204 , ILE G:210 , GLU G:212 , HOH G:2204
BINDING SITE FOR RESIDUE EDO G1227
16
BC7
SOFTWARE
GLU F:26 , THR H:108 , GLN H:109 , ASP H:110 , LYS H:121 , LYS H:123 , EDO H:1228 , HOH H:2214
BINDING SITE FOR RESIDUE EDO H1227
17
BC8
SOFTWARE
ARG H:17 , GLU H:19 , LYS H:121 , VAL H:122 , LYS H:123 , EDO H:1227
BINDING SITE FOR RESIDUE EDO H1228
18
BC9
SOFTWARE
SER A:203 , HIS A:204 , ASN A:205 , ILE A:210 , GLU A:212 , HOH A:2218
BINDING SITE FOR RESIDUE EDO A1227
19
CC1
SOFTWARE
SER B:203 , ILE B:210 , GLU B:212 , HOH B:2224 , ASN H:205
BINDING SITE FOR RESIDUE EDO B1227
20
CC2
SOFTWARE
GLU F:19 , GLY F:20 , SER F:21 , GLU F:26 , PHE F:124 , HOH F:2015 , LYS H:123 , EDO H:1230
BINDING SITE FOR RESIDUE EDO F1228
21
CC3
SOFTWARE
ASN B:205 , SER H:203 , HIS H:204 , ASN H:205 , ILE H:210 , GLU H:212 , HOH H:2215 , HOH H:2216
BINDING SITE FOR RESIDUE EDO H1229
22
CC4
SOFTWARE
GLY B:191 , TYR B:192 , HIS B:221
BINDING SITE FOR RESIDUE EDO B1228
23
CC5
SOFTWARE
LYS F:123 , EDO F:1228 , GLU H:19 , GLY H:20 , SER H:21 , LYS H:123 , PHE H:124 , HOH H:2011
BINDING SITE FOR RESIDUE EDO H1230
24
CC6
SOFTWARE
PRO F:80 , PRO F:190 , GLY F:191 , TYR F:192 , HIS F:221 , HOH F:2230
BINDING SITE FOR RESIDUE EDO F1229
25
CC7
SOFTWARE
HIS C:204 , ASN C:205 , LYS E:45 , SER E:203 , HIS E:204 , ILE E:210 , GLU E:212 , HOH E:2213 , HOH E:2232
BINDING SITE FOR RESIDUE EDO E1227
26
CC8
SOFTWARE
GLU A:19 , GLY A:20 , SER A:21 , PHE A:124 , ILE A:125 , HOH A:2219 , LYS C:123 , EDO C:1227
BINDING SITE FOR RESIDUE EDO A1228
27
CC9
SOFTWARE
GLU B:19 , GLY B:20 , GLU B:26 , PHE B:124 , HOH B:2226 , LYS D:123
BINDING SITE FOR RESIDUE EDO B1229
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2vaea_ (A:)
1b: SCOP_d2vaeb_ (B:)
1c: SCOP_d2vaec_ (C:)
1d: SCOP_d2vaed_ (D:)
1e: SCOP_d2vaee_ (E:)
1f: SCOP_d2vaef_ (F:)
1g: SCOP_d2vaeg_ (G:)
1h: SCOP_d2vaeh_ (H:)
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Classes
(
)
(
)
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(
)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
Fluorescent proteins
(271)
Protein domain
:
automated matches
(102)
Coral (Discosoma sp.) [TaxId: 86600]
(17)
1a
d2vaea_
A:
1b
d2vaeb_
B:
1c
d2vaec_
C:
1d
d2vaed_
D:
1e
d2vaee_
E:
1f
d2vaef_
F:
1g
d2vaeg_
G:
1h
d2vaeh_
H:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Select:
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Sorry, no Info available
[
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_GFP_2vaeH01 (H:7-222)
1b: PFAM_GFP_2vaeH02 (H:7-222)
1c: PFAM_GFP_2vaeH03 (H:7-222)
1d: PFAM_GFP_2vaeH04 (H:7-222)
1e: PFAM_GFP_2vaeH05 (H:7-222)
1f: PFAM_GFP_2vaeH06 (H:7-222)
1g: PFAM_GFP_2vaeH07 (H:7-222)
1h: PFAM_GFP_2vaeH08 (H:7-222)
View:
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Clans
(
)
(
)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
GFP
(101)
Family
:
GFP
(101)
Discosoma sp. (Sea anemone)
(6)
1a
GFP-2vaeH01
H:7-222
1b
GFP-2vaeH02
H:7-222
1c
GFP-2vaeH03
H:7-222
1d
GFP-2vaeH04
H:7-222
1e
GFP-2vaeH05
H:7-222
1f
GFP-2vaeH06
H:7-222
1g
GFP-2vaeH07
H:7-222
1h
GFP-2vaeH08
H:7-222
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (342 KB)
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