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2VAC
Asym. Unit
Info
Asym.Unit (31 KB)
Biol.Unit 1 (27 KB)
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(1)
Title
:
STRUCTURE OF N-TERMINAL ACTIN DEPOLYMERIZING FACTOR HOMOLOGY (ADF-H) DOMAIN OF HUMAN TWINFILIN-2
Authors
:
J. M. Elkins, A. C. W. Pike, O. King, E. Salah, P. Savitsky, F. Von Delft, J. Weigelt, A. Edwards, C. H. Arrowsmith, M. Sundstrom, S. Knapp
Date
:
30 Aug 07 (Deposition) - 16 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase, Actin Binding, Phosphorylation, Cofilin-Like, Cytoskeleton, Actin-Binding, Protein Tyrosine Kinase-9, Actin Depolymerizing Factor Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Elkins, A. C. W. Pike, O. King, E. Salah, P. Savitsky, F. Von Delft J. Weigelt, A. Edwards, C. H. Arrowsmith, M. Sundstrom, S. Knapp
Crystal Structure Of N-Terminal Actin Depolymerizing Factor Homology (Adf-H) Domain Of Human Twinfilin-2
To Be Published
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
ZN
3
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:-1 , HIS A:8 , GLU A:44 , HOH A:2157
BINDING SITE FOR RESIDUE ZN A1138
2
AC2
SOFTWARE
HIS A:116 , ASP A:119 , HIS A:137 , HOH A:2158
BINDING SITE FOR RESIDUE ZN A1139
3
AC3
SOFTWARE
GLU A:15 , GLU A:82 , HOH A:2160 , HOH A:2161
BINDING SITE FOR RESIDUE ZN A1140
4
AC4
SOFTWARE
LYS A:14 , PHE A:17 , ARG A:21 , GLU A:111 , PHE A:112 , HOH A:2132
BINDING SITE FOR RESIDUE EDO A1141
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_042407 (R72C, chain A, )
2: VAR_042408 (Q76R, chain A, )
3: VAR_042409 (A103T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042407
R
72
C
TWF2_HUMAN
Polymorphism
35114109
A
R
72
C
2
UniProt
VAR_042408
Q
76
R
TWF2_HUMAN
Polymorphism
35711542
A
Q
76
R
3
UniProt
VAR_042409
A
103
T
TWF2_HUMAN
Unclassified
---
A
A
103
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ADF_H (A:6-137|-)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADF_H
PS51263
ADF-H domain profile.
TWF2_HUMAN
4-139
177-313
1
A:6-137
-
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Exons
(5, 5)
Info
All Exons
Exon 1.1a (A:-1-9)
Exon 1.2 (A:9-35)
Exon 1.3b (A:35-94)
Exon 1.4 (A:95-126)
Exon 1.5 (A:127-137)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3b
4: Boundary 1.3b/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000305533
1a
ENSE00001931654
chr3:
52273177-52273008
170
TWF2_HUMAN
1-9
9
1
A:-1-9
6
1.2
ENST00000305533
2
ENSE00001719725
chr3:
52269122-52269045
78
TWF2_HUMAN
9-35
27
1
A:9-35
27
1.3b
ENST00000305533
3b
ENSE00001648090
chr3:
52266138-52265960
179
TWF2_HUMAN
35-94
60
1
A:35-94
60
1.4
ENST00000305533
4
ENSE00001702468
chr3:
52265555-52265460
96
TWF2_HUMAN
95-126
32
1
A:95-126
32
1.5
ENST00000305533
5
ENSE00001661253
chr3:
52265247-52265143
105
TWF2_HUMAN
127-161
35
1
A:127-137
11
1.6b
ENST00000305533
6b
ENSE00002169913
chr3:
52265011-52264886
126
TWF2_HUMAN
162-203
42
0
-
-
1.7
ENST00000305533
7
ENSE00002193046
chr3:
52264086-52263936
151
TWF2_HUMAN
204-254
51
0
-
-
1.8
ENST00000305533
8
ENSE00002200058
chr3:
52263798-52263677
122
TWF2_HUMAN
254-294
41
0
-
-
1.9b
ENST00000305533
9b
ENSE00001125151
chr3:
52263217-52262626
592
TWF2_HUMAN
295-349
55
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2vaca_ (A:)
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Classes
(
)
(
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Folds
(
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)
Superfamilies
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Gelsolin-like
(96)
Superfamily
:
Actin depolymerizing proteins
(88)
Family
:
Cofilin-like
(32)
Protein domain
:
automated matches
(12)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2vaca_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2vacA00 (A:-1-137)
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Topologies
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Severin
(74)
Homologous Superfamily
:
Severin
(74)
Human (Homo sapiens)
(36)
1a
2vacA00
A:-1-137
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Cofilin_ADF_2vacA01 (A:11-137)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
ADF
(44)
Family
:
Cofilin_ADF
(21)
Homo sapiens (Human)
(11)
1a
Cofilin_ADF-2vacA01
A:11-137
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Chain A
Asymmetric Unit 1
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Asym.Unit (31 KB)
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