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2V8U
Asym. Unit
Info
Asym.Unit (247 KB)
Biol.Unit 1 (711 KB)
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(1)
Title
:
ATOMIC RESOLUTION STRUCTURE OF MN CATALASE FROM THERMUS THERMOPHILUS
Authors
:
V. V. Barynin, S. V. Antonyuk, A. A. Vaguine, W. R. Melik-Adamyan, A. N. Popov, V. S. Lamsin, P. M. Harrison, P. J. Artymiuk
Date
:
14 Aug 07 (Deposition) - 25 Sep 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Manganese Catalase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. V. Antonyuk, W. R. Melik-Adamyan, A. N. Popov, V. S. Lamsin, P. D. Hempstead, P. M. Harrison, P. J. Artymyuk, V. V. Barynin
Three-Dimentional Structure Of The Enzyme Dimanganese Catalase From Thermus Thermophilus At 1 Angstrom Resolution
Crystallogr. Rep. (Transl. V. 45 105 2000 Kristallografiya)
[
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Hetero Components
(4, 26)
Info
All Hetero Components
1a: LITHIUM ION (LIa)
1b: LITHIUM ION (LIb)
1c: LITHIUM ION (LIc)
1d: LITHIUM ION (LId)
1e: LITHIUM ION (LIe)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
3a: OXYGEN ATOM (Oa)
3b: OXYGEN ATOM (Ob)
3c: OXYGEN ATOM (Oc)
3d: OXYGEN ATOM (Od)
3e: OXYGEN ATOM (Oe)
3f: OXYGEN ATOM (Of)
3g: OXYGEN ATOM (Og)
3h: OXYGEN ATOM (Oh)
3i: OXYGEN ATOM (Oi)
3j: OXYGEN ATOM (Oj)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LI
5
Ligand/Ion
LITHIUM ION
2
MN
4
Ligand/Ion
MANGANESE (II) ION
3
O
10
Ligand/Ion
OXYGEN ATOM
4
SO4
7
Ligand/Ion
SULFATE ION
[
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]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:36 , GLU A:70 , HIS A:73 , MN A:1304 , O A:1305 , O A:1306 , O A:1307 , O A:1308 , O A:1309
BINDING SITE FOR RESIDUE MN A1303
02
AC2
SOFTWARE
GLU A:70 , GLU A:155 , HIS A:188 , MN A:1303 , O A:1305 , O A:1306 , O A:1307 , O A:1308
BINDING SITE FOR RESIDUE MN A1304
03
AC3
SOFTWARE
GLU A:70 , HIS A:73 , HIS A:188 , MN A:1303 , MN A:1304 , O A:1306 , O A:1307 , O A:1308 , O A:1309 , HOH A:2531
BINDING SITE FOR RESIDUE O A1305
04
AC4
SOFTWARE
GLU A:36 , THR A:39 , GLU A:70 , GLU A:155 , MN A:1303 , MN A:1304 , O A:1305 , O A:1307 , O A:1308 , O A:1309
BINDING SITE FOR RESIDUE O A1306
05
AC5
SOFTWARE
GLU A:36 , GLU A:70 , HIS A:73 , GLU A:155 , HIS A:188 , MN A:1303 , MN A:1304 , O A:1305 , O A:1306 , O A:1308 , O A:1309 , HOH A:2529 , HOH A:2531
BINDING SITE FOR RESIDUE O A1307
06
AC6
SOFTWARE
GLU A:36 , THR A:39 , LYS A:162 , MN A:1303 , MN A:1304 , O A:1305 , O A:1306 , O A:1307 , O A:1309 , HOH A:2529 , HOH A:2530
BINDING SITE FOR RESIDUE O A1308
07
AC7
SOFTWARE
GLU A:36 , HIS A:73 , LYS A:162 , LEU A:181 , MN A:1303 , O A:1305 , O A:1306 , O A:1307 , O A:1308 , HOH A:2529 , HOH A:2531
BINDING SITE FOR RESIDUE O A1309
08
AC8
SOFTWARE
ASP A:19 , HOH A:2053 , HOH A:2060 , HOH A:2533
BINDING SITE FOR RESIDUE LI A1310
09
AC9
SOFTWARE
ASP A:240 , HOH A:2127 , HOH A:2164 , HOH A:2410 , HOH A:2416
BINDING SITE FOR RESIDUE LI A1311
10
BC1
SOFTWARE
PRO A:15 , LYS A:16 , ASN A:171 , PRO A:172 , HOH A:2318 , HOH A:2532 , HOH A:2533 , HOH A:2534 , HOH A:2535 , HOH A:2536
BINDING SITE FOR RESIDUE SO4 A1312
11
BC2
SOFTWARE
PHE A:229 , PRO A:266 , THR A:267 , GLY A:268 , HOH A:2402 , HOH A:2538 , HOH A:2539 , HOH A:2540 , HOH A:2541 , HOH A:2542 , ARG B:7
BINDING SITE FOR RESIDUE SO4 A1313
12
BC3
SOFTWARE
HOH A:2392 , HOH A:2447 , HOH A:2554
BINDING SITE FOR RESIDUE LI A1314
13
BC4
SOFTWARE
LYS A:54 , THR A:257 , GLU A:258 , HOH A:2455 , HOH A:2544 , HOH A:2546 , HOH A:2547 , HOH A:2553
BINDING SITE FOR RESIDUE SO4 A1315
14
BC5
SOFTWARE
LYS A:54 , ARG A:231 , HOH A:2548 , HOH A:2549 , HOH A:2550 , HOH A:2551 , HOH A:2552 , HOH A:2553 , HOH A:2554 , HOH A:2555
BINDING SITE FOR RESIDUE SO4 A1316
15
BC6
SOFTWARE
LEU B:12 , HOH B:2032 , HOH B:2037
BINDING SITE FOR RESIDUE LI B1303
16
BC7
SOFTWARE
GLN B:9 , ILE B:10 , TYR B:180 , HOH B:2024 , HOH B:2310
BINDING SITE FOR RESIDUE LI B1304
17
BC8
SOFTWARE
LYS B:194 , GLY B:250 , ALA B:251 , HOH B:2318 , HOH B:2505 , HOH B:2506 , HOH B:2507 , HOH B:2508 , HOH B:2509 , HOH B:2510
BINDING SITE FOR RESIDUE SO4 B1305
18
BC9
SOFTWARE
GLU B:36 , GLU B:70 , HIS B:73 , MN B:1307 , O B:1308 , O B:1309 , O B:1310 , O B:1311 , O B:1312
BINDING SITE FOR RESIDUE MN B1306
19
CC1
SOFTWARE
GLU B:70 , GLU B:155 , HIS B:188 , MN B:1306 , O B:1308 , O B:1309 , O B:1310 , O B:1311
BINDING SITE FOR RESIDUE MN B1307
20
CC2
SOFTWARE
GLU B:70 , HIS B:73 , GLY B:185 , HIS B:188 , MN B:1306 , MN B:1307 , O B:1309 , O B:1310 , O B:1311 , O B:1312 , HOH B:2511
BINDING SITE FOR RESIDUE O B1308
21
CC3
SOFTWARE
GLU B:36 , THR B:39 , GLU B:70 , GLU B:155 , MN B:1306 , MN B:1307 , O B:1308 , O B:1310 , O B:1311 , O B:1312
BINDING SITE FOR RESIDUE O B1309
22
CC4
SOFTWARE
GLU B:36 , GLU B:70 , HIS B:73 , GLU B:155 , HIS B:188 , MN B:1306 , MN B:1307 , O B:1308 , O B:1309 , O B:1311 , O B:1312 , HOH B:2295 , HOH B:2511
BINDING SITE FOR RESIDUE O B1310
23
CC5
SOFTWARE
GLU B:36 , THR B:39 , LYS B:162 , MN B:1306 , MN B:1307 , O B:1308 , O B:1309 , O B:1310 , O B:1312 , HOH B:2105 , HOH B:2295
BINDING SITE FOR RESIDUE O B1311
24
CC6
SOFTWARE
GLU B:36 , HIS B:73 , LYS B:162 , LEU B:181 , MN B:1306 , O B:1308 , O B:1309 , O B:1310 , O B:1311 , HOH B:2295 , HOH B:2511
BINDING SITE FOR RESIDUE O B1312
25
CC7
SOFTWARE
LYS A:222 , MET B:14 , HOH B:2512 , HOH B:2513 , HOH B:2516 , HOH B:2517 , HOH B:2518 , HOH B:2519
BINDING SITE FOR RESIDUE SO4 B1313
26
CC8
SOFTWARE
LYS B:57 , GLU B:239 , TYR B:241 , ARG B:242 , HOH B:2402 , HOH B:2520 , HOH B:2522
BINDING SITE FOR RESIDUE SO4 B1314
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2v8ua_ (A:)
1b: SCOP_d2v8ub_ (B:)
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Classes
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Manganese catalase (T-catalase)
(7)
Protein domain
:
automated matches
(3)
Thermus thermophilus [TaxId: 262724]
(2)
1a
d2v8ua_
A:
1b
d2v8ub_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Mn_catalase_2v8uB01 (B:1-302)
1b: PFAM_Mn_catalase_2v8uB02 (B:1-302)
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Clan
:
Ferritin
(185)
Family
:
Mn_catalase
(2)
Thermus thermophilus
(2)
1a
Mn_catalase-2v8uB01
B:1-302
1b
Mn_catalase-2v8uB02
B:1-302
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