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2V8T
Asym. Unit
Info
Asym.Unit (247 KB)
Biol.Unit 1 (715 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MN CATALASE FROM THERMUS THERMOPHILUS COMPLEXED WITH CHLORIDE
Authors
:
S. V. Antonyuk, V. V. Barynin, A. A. Vaguine, W. R. Melik-Adamyan, A. N. Popov, V. S. Lamsin, P. M. Harrison, P. J. Artymiuk
Date
:
14 Aug 07 (Deposition) - 11 Sep 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.98
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Manganese Catalase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. V. Antonyuk, W. R. Melik-Adamyan, A. N. Popov, V. S. Lamsin, P. D. Hempstead, P. M. Harrison, P. J. Artymyuk, V. V. Barynin
Three-Dimentional Structure Of The Enzyme Dimanganese Catalase From Thermus Thermophilus At 1 Angstrom Resolution
Crystallogr. Rep. (Transl. V. 45 105 2000 Kristallografiya)
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: LITHIUM ION (LIa)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
LI
1
Ligand/Ion
LITHIUM ION
3
MN
4
Ligand/Ion
MANGANESE (II) ION
4
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:36 , GLU A:70 , HIS A:73 , MN A:1304 , CL A:1305 , CL A:1306 , HOH A:2503 , HOH A:2504
BINDING SITE FOR RESIDUE MN A1303
02
AC2
SOFTWARE
GLU A:70 , GLU A:155 , HIS A:188 , MN A:1303 , CL A:1305 , CL A:1306 , HOH A:2503
BINDING SITE FOR RESIDUE MN A1304
03
AC3
SOFTWARE
HIS A:73 , GLY A:185 , HIS A:188 , MN A:1303 , MN A:1304 , CL A:1306 , HOH A:2503 , HOH A:2504
BINDING SITE FOR RESIDUE CL A1305
04
AC4
SOFTWARE
GLU A:36 , THR A:39 , GLU A:70 , GLU A:155 , MN A:1303 , MN A:1304 , CL A:1305 , HOH A:2288 , HOH A:2503
BINDING SITE FOR RESIDUE CL A1306
05
AC5
SOFTWARE
PHE A:229 , PRO A:266 , THR A:267 , GLY A:268 , HOH A:2376 , HOH A:2505 , HOH A:2506 , HOH A:2507 , HOH A:2508 , ARG B:7
BINDING SITE FOR RESIDUE SO4 A1307
06
AC6
SOFTWARE
PRO A:15 , LYS A:16 , ASN A:171 , PRO A:172 , HOH A:2296 , HOH A:2509 , HOH A:2510 , HOH A:2511 , HOH A:2512 , HOH A:2513
BINDING SITE FOR RESIDUE SO4 A1308
07
AC7
SOFTWARE
ASP A:19 , HOH A:2036 , HOH A:2042 , HOH A:2052 , HOH A:2512
BINDING SITE FOR RESIDUE LI A1309
08
AC8
SOFTWARE
LYS B:194 , LYS B:249 , GLY B:250 , ALA B:251 , HOH B:2475 , HOH B:2476 , HOH B:2477 , HOH B:2478 , HOH B:2479 , HOH B:2480
BINDING SITE FOR RESIDUE SO4 B1303
09
AC9
SOFTWARE
ARG B:242
BINDING SITE FOR RESIDUE SO4 B1304
10
BC1
SOFTWARE
GLU B:36 , GLU B:70 , HIS B:73 , MN B:1306 , CL B:1307 , CL B:1308 , HOH B:2481 , HOH B:2482
BINDING SITE FOR RESIDUE MN B1305
11
BC2
SOFTWARE
GLU B:70 , GLU B:155 , HIS B:188 , MN B:1305 , CL B:1307 , CL B:1308 , HOH B:2481
BINDING SITE FOR RESIDUE MN B1306
12
BC3
SOFTWARE
HIS B:73 , GLY B:185 , HIS B:188 , MN B:1305 , MN B:1306 , CL B:1308 , HOH B:2481 , HOH B:2482
BINDING SITE FOR RESIDUE CL B1307
13
BC4
SOFTWARE
GLU B:36 , THR B:39 , GLU B:70 , GLU B:155 , LYS B:162 , MN B:1305 , MN B:1306 , CL B:1307 , HOH B:2481
BINDING SITE FOR RESIDUE CL B1308
14
BC5
SOFTWARE
LYS B:57 , GLU B:239 , TYR B:241 , ARG B:242 , HOH B:2361 , HOH B:2370 , HOH B:2483 , HOH B:2484
BINDING SITE FOR RESIDUE SO4 B1309
15
BC6
SOFTWARE
ARG A:231 , HOH A:2367 , HOH A:2368 , HOH A:2515 , HOH A:2516 , HOH A:2518 , HOH A:2520
BINDING SITE FOR RESIDUE SO4 A1310
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2v8ta_ (A:)
1b: SCOP_d2v8tb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Manganese catalase (T-catalase)
(7)
Protein domain
:
automated matches
(3)
Thermus thermophilus [TaxId: 262724]
(2)
1a
d2v8ta_
A:
1b
d2v8tb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Mn_catalase_2v8tB01 (B:1-302)
1b: PFAM_Mn_catalase_2v8tB02 (B:1-302)
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Clan
:
Ferritin
(185)
Family
:
Mn_catalase
(2)
Thermus thermophilus
(2)
1a
Mn_catalase-2v8tB01
B:1-302
1b
Mn_catalase-2v8tB02
B:1-302
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (247 KB)
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Header - Biol.Unit 1
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