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2V8Q
Asym. Unit
Info
Asym.Unit (97 KB)
Biol.Unit 1 (89 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE REGULATORY FRAGMENT OF MAMMALIAN AMPK IN COMPLEXES WITH AMP
Authors
:
B. Xiao, R. Heath, P. Saiu, F. C. Leiper, P. Leone, C. Jing, P. A. Walker, L J. F. Eccleston, C. T. Davis, S. R. Martin, D. Carling, S. J. Gamblin
Date
:
13 Aug 07 (Deposition) - 25 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,E
Biol. Unit 1: A,B,E (1x)
Keywords
:
Phosphorylation, Nucleotide-Binding, Serine/Threonine-Protein Kinase, Kinase, Magnesium, Cbs Domain, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Xiao, R. Heath, P. Saiu, F. C. Leiper, P. Leone, C. Jing, P. A. Walker, L. Haire, J. F. Eccleston, C. T. Davis, S. R. Martin, D. Carling, S. J. Gamblin
Structural Basis For Amp Binding To Mammalian Amp- Activated Protein Kinase
Nature V. 449 496 2007
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
1c: ADENOSINE MONOPHOSPHATE (AMPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
3
Ligand/Ion
ADENOSINE MONOPHOSPHATE
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG E:69 , LYS E:169 , ILE E:239 , SER E:241 , PHE E:243 , ASP E:244 , ARG E:268 , PHE E:272 , VAL E:275 , LEU E:276 , VAL E:296 , HIS E:297 , ARG E:298 , HOH E:2283
BINDING SITE FOR RESIDUE AMP E1327
2
AC2
SOFTWARE
MET E:84 , THR E:86 , THR E:88 , ASP E:89 , PRO E:127 , LEU E:128 , VAL E:129 , ILE E:149 , HIS E:150 , ARG E:151 , PRO E:153 , HOH E:2284 , HOH E:2286 , HOH E:2287
BINDING SITE FOR RESIDUE AMP E1328
3
AC3
SOFTWARE
ARG A:457 , HIS E:150 , THR E:199 , ASN E:202 , ILE E:203 , ALA E:204 , VAL E:224 , SER E:225 , ALA E:226 , HIS E:297 , ILE E:311 , SER E:313 , SER E:315 , ASP E:316 , HOH E:2238 , HOH E:2289 , HOH E:2290 , HOH E:2291
BINDING SITE FOR RESIDUE AMP E1329
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CBS (E:42-102|E:124-186|E:197-259|E:271...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBS
PS51371
CBS domain profile.
AAKG1_RAT
42-102
124-186
197-259
271-328
4
E:42-102
E:124-186
E:197-259
E:271-326
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Exons
(6, 6)
Info
All Exons
Exon 1.7 (A:393-425)
Exon 1.8 (A:426-468)
Exon 1.9 (A:468-548 (gaps))
Exon 2.6b (B:190-222)
Exon 2.7 (B:233-247)
Exon 2.9d (B:248-272)
View:
Select:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/-
5: Boundary 2.5/2.6b
6: Boundary 2.6b/2.7
7: Boundary 2.7/2.9d
8: Boundary 2.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000017626
1
ENSRNOE00000121765
chr2:
54327788-54327914
127
AAPK1_RAT
1-43
43
0
-
-
1.2
ENSRNOT00000017626
2
ENSRNOE00000121918
chr2:
54343613-54343754
142
AAPK1_RAT
43-90
48
0
-
-
1.3
ENSRNOT00000017626
3
ENSRNOE00000122106
chr2:
54345598-54345691
94
AAPK1_RAT
90-121
32
0
-
-
1.4
ENSRNOT00000017626
4
ENSRNOE00000122282
chr2:
54349571-54349715
145
AAPK1_RAT
122-170
49
0
-
-
1.5
ENSRNOT00000017626
5
ENSRNOE00000122519
chr2:
54350756-54350843
88
AAPK1_RAT
170-199
30
0
-
-
1.6
ENSRNOT00000017626
6
ENSRNOE00000122797
chr2:
54354710-54354934
225
AAPK1_RAT
199-274
76
0
-
-
1.7
ENSRNOT00000017626
7
ENSRNOE00000122996
chr2:
54358193-54358679
487
AAPK1_RAT
274-436
163
1
A:393-425
33
1.8
ENSRNOT00000017626
8
ENSRNOE00000123286
chr2:
54358783-54358909
127
AAPK1_RAT
437-479
43
1
A:426-468
43
1.9
ENSRNOT00000017626
9
ENSRNOE00000224993
chr2:
54360218-54360462
245
AAPK1_RAT
479-559
81
1
A:468-548 (gaps)
81
2.1b
ENST00000254101
1b
ENSE00001858470
chr1:
146644123-146644008
116
AAKB2_HUMAN
-
0
0
-
-
2.2
ENST00000254101
2
ENSE00002156607
chr1:
146643746-146643568
179
AAKB2_HUMAN
1-52
52
0
-
-
2.3
ENST00000254101
3
ENSE00000903087
chr1:
146639512-146639346
167
AAKB2_HUMAN
53-108
56
0
-
-
2.4
ENST00000254101
4
ENSE00000903088
chr1:
146638518-146638425
94
AAKB2_HUMAN
108-139
32
0
-
-
2.5
ENST00000254101
5
ENSE00000903089
chr1:
146638197-146638077
121
AAKB2_HUMAN
140-180
41
0
-
-
2.6b
ENST00000254101
6b
ENSE00001706527
chr1:
146634152-146634019
134
AAKB2_HUMAN
180-224
45
1
B:190-222
33
2.7
ENST00000254101
7
ENSE00001647737
chr1:
146633359-146633291
69
AAKB2_HUMAN
225-247
23
1
B:233-247
15
2.9d
ENST00000254101
9d
ENSE00001949097
chr1:
146631221-146626685
4537
AAKB2_HUMAN
248-272
25
1
B:248-272
25
[
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SCOP Domains
(3, 4)
Info
All SCOP Domains
1a: SCOP_d2v8qb1 (B:190-272)
2a: SCOP_d2v8qe1 (E:182-326)
2b: SCOP_d2v8qe2 (E:23-181)
3a: SCOP_d2v8qa1 (A:396-548)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
AMPKBI-like
(13)
Superfamily
:
AMPKBI-like
(13)
Family
:
AMPKBI-like
(13)
Protein domain
:
5'-AMP-activated protein kinase subunit beta-2
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2v8qb1
B:190-272
Fold
:
CBS-domain pair
(75)
Superfamily
:
CBS-domain pair
(75)
Family
:
CBS-domain pair
(50)
Protein domain
:
5'-AMP-activated protein kinase subunit gamma-1, AMPKg
(7)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(7)
2a
d2v8qe1
E:182-326
2b
d2v8qe2
E:23-181
Fold
:
TBP-like
(289)
Superfamily
:
KA1-like
(20)
Family
:
Ssp2 C-terminal domain-like
(16)
Protein domain
:
5'-AMP-activated protein kinase catalytic subunit alpha-1, AMPK1
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
3a
d2v8qa1
A:396-548
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_AMPKBI_2v8qB01 (B:190-272)
2a: PFAM_CBS_2v8qE01 (E:262-323)
2b: PFAM_CBS_2v8qE02 (E:262-323)
2c: PFAM_CBS_2v8qE03 (E:262-323)
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Clans
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(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: AMPKBI]
(9)
Family
:
AMPKBI
(9)
Homo sapiens (Human)
(6)
1a
AMPKBI-2v8qB01
B:190-272
Clan
:
no clan defined [family: CBS]
(51)
Family
:
CBS
(51)
Rattus norvegicus (Rat)
(6)
2a
CBS-2v8qE01
E:262-323
2b
CBS-2v8qE02
E:262-323
2c
CBS-2v8qE03
E:262-323
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