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2V8P
Asym. Unit
Info
Asym.Unit (110 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
ISPE IN COMPLEX WITH ADP AND CDP
Authors
:
T. Sgraja, M. S. Alphey, W. N. Hunter
Date
:
13 Aug 07 (Deposition) - 21 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
4-Diphosphocytidyl-2C-Methyl-D- Erythritol, Aquifex Aeolicus, Nucleotide-Binding, Isoprene Biosynthesis, Kinase, Transferase, Atp-Binding, Non-Mevalonate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Sgraja, M. S. Alphey, S. Ghilagaber, R. Marquez, M. N. Robertson, J. L. Hemmings, S. Lauw, F. Rohdich, A. Bacher, W. Eisenreich, V. Illarionova, W. N. Hunter
Characterization Of Aquifex Aeolicus 4- Diphosphocytidyl-2C-Methyl-D-Erythritol Kinase - Ligand Recognition In A Template For Antimicrobial Drug Discovery.
Febs J. V. 275 2779 2008
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: CYTIDINE-5'-DIPHOSPHATE (CDPa)
2b: CYTIDINE-5'-DIPHOSPHATE (CDPb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CDP
2
Ligand/Ion
CYTIDINE-5'-DIPHOSPHATE
3
CL
2
Ligand/Ion
CHLORIDE ION
4
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:24 , HIS A:25 , GLY A:172 , TYR A:175 , HOH A:2026 , HOH A:2204 , HOH A:2205
BINDING SITE FOR RESIDUE CDP A1269
02
AC2
SOFTWARE
GLU A:59 , ASN A:60 , LEU A:61 , LYS A:85 , PRO A:89 , GLY A:90 , ALA A:91 , GLY A:92 , LEU A:93 , GLY A:94 , GLY A:95 , GLY A:96 , ASN A:99 , HOH A:2058 , HOH A:2208 , HOH A:2209 , HOH A:2210 , HOH A:2211
BINDING SITE FOR RESIDUE ADP A1270
03
AC3
SOFTWARE
ARG A:213 , TYR A:223 , ARG A:224 , HOH A:2175
BINDING SITE FOR RESIDUE SO4 A1271
04
AC4
SOFTWARE
ASN A:52 , GLN A:84
BINDING SITE FOR RESIDUE SO4 A1272
05
AC5
SOFTWARE
TYR B:24 , HIS B:25 , LEU B:61 , SER B:97 , ILE B:127 , SER B:128 , ALA B:129 , LYS B:145 , SER B:169 , SER B:170 , THR B:171 , GLY B:172 , TYR B:175 , ADP B:1270 , HOH B:2127 , HOH B:2277 , HOH B:2278
BINDING SITE FOR RESIDUE CDP B1269
06
AC6
SOFTWARE
GLU B:59 , ASN B:60 , LEU B:61 , LYS B:85 , PRO B:88 , PRO B:89 , GLY B:90 , ALA B:91 , GLY B:92 , LEU B:93 , GLY B:94 , GLY B:96 , ASN B:99 , THR B:171 , CDP B:1269 , HOH B:2125 , HOH B:2127 , HOH B:2168 , HOH B:2278 , HOH B:2279 , HOH B:2280
BINDING SITE FOR RESIDUE ADP B1270
07
AC7
SOFTWARE
ARG B:213 , TYR B:223 , ARG B:224 , HOH B:2281 , HOH B:2282
BINDING SITE FOR RESIDUE SO4 B1271
08
AC8
SOFTWARE
ARG B:43 , ARG B:48 , ASN B:220 , ARG B:224 , HOH B:2283
BINDING SITE FOR RESIDUE SO4 B1272
09
AC9
SOFTWARE
GLU A:205 , ASN A:206 , PHE A:234 , VAL A:235 , HOH A:2159
BINDING SITE FOR RESIDUE CL A1273
10
BC1
SOFTWARE
ASN B:206 , PHE B:234 , VAL B:235 , HOH B:2213
BINDING SITE FOR RESIDUE CL B1273
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_GHMP_kinases_N_2v8pB01 (B:80-138)
1b: PFAM_GHMP_kinases_N_2v8pB02 (B:80-138)
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Clan
:
S5
(103)
Family
:
GHMP_kinases_N
(23)
Aquifex aeolicus
(5)
1a
GHMP_kinases_N-2v8pB01
B:80-138
1b
GHMP_kinases_N-2v8pB02
B:80-138
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Asymmetric Unit 1
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Asym.Unit (110 KB)
Header - Asym.Unit
Biol.Unit 1 (53 KB)
Header - Biol.Unit 1
Biol.Unit 2 (55 KB)
Header - Biol.Unit 2
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