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2V76
Asym. Unit
Info
Asym.Unit (156 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (40 KB)
Biol.Unit 3 (39 KB)
Biol.Unit 4 (39 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN DOK1 PTB DOMAIN
Authors
:
C. L. Oxley, N. J. Anthis, E. D. Lowe, I. D. Campbell, K. L. Wegener
Date
:
26 Jul 07 (Deposition) - 08 Jan 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Alternative Splicing, Protein-Binding, Ptb Domain, Phosphorylation, Adaptor Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. L. Oxley, N. J. Anthis, E. D. Lowe, I. Vakonakis, I. D. Campbell, K. L. Wegener
An Integrin Phosphorylation Switch: The Effect Of {Beta}3 Integrin Tail Phosphorylation On Dok1 And Talin Binding.
J. Biol. Chem. V. 283 5420 2008
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: GLYCEROL (GOLa)
3a: TRIETHYLENE GLYCOL (PGEa)
3b: TRIETHYLENE GLYCOL (PGEb)
3c: TRIETHYLENE GLYCOL (PGEc)
3d: TRIETHYLENE GLYCOL (PGEd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
1
Ligand/Ion
GLYCEROL
3
PGE
4
Ligand/Ion
TRIETHYLENE GLYCOL
4
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN B:6 , TRP B:8 , ARG C:19 , PRO C:77
BINDING SITE FOR RESIDUE PGE B1107
02
AC2
SOFTWARE
ARG A:19 , GLN D:6 , TRP D:8 , HOH D:2005 , HOH D:2083 , HOH D:2084 , HOH D:2085 , HOH D:2086
BINDING SITE FOR RESIDUE PGE D1104
03
AC3
SOFTWARE
ARG B:19 , PRO B:77 , HOH B:2030 , HOH B:2102 , HOH B:2103 , HOH B:2104 , GLN C:6 , TRP C:8 , VAL C:27
BINDING SITE FOR RESIDUE PGE B1108
04
AC4
SOFTWARE
GLN A:6 , TRP A:8 , ARG D:19 , PRO D:77
BINDING SITE FOR RESIDUE PGE A1105
05
AC5
SOFTWARE
ARG D:59 , GLY D:73 , ARG D:74 , ARG D:75
BINDING SITE FOR RESIDUE SO4 D1105
06
AC6
SOFTWARE
ARG B:59 , GLY B:73 , ARG B:74 , HOH B:2105 , HOH B:2106
BINDING SITE FOR RESIDUE SO4 B1109
07
AC7
SOFTWARE
ARG A:59 , GLY A:73 , ARG A:74 , HOH A:2097
BINDING SITE FOR RESIDUE SO4 A1106
08
AC8
SOFTWARE
HOH B:2028 , GLN C:89 , ASP C:92 , HIS C:102 , HOH C:2092 , HOH C:2093 , HOH C:2094
BINDING SITE FOR RESIDUE SO4 C1107
09
AC9
SOFTWARE
ARG C:60 , TYR C:61 , GLU C:98 , HOH C:2095
BINDING SITE FOR RESIDUE GOL C1108
10
BC1
SOFTWARE
ARG A:60 , TYR A:61 , GLU A:98 , HOH A:2099
BINDING SITE FOR RESIDUE EDO A1107
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IRS_PTB (A:4-104)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IRS_PTB
PS51064
IRS-type PTB domain profile.
DOK1_HUMAN
151-259
1
A:4-104
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Exons
(3, 9)
Info
All Exons
Exon 1.4j (A:2-4 (gaps) | - | - | -)
Exon 1.5b (A:4-65 (gaps) | B:5-65 | C:5-65 | ...)
Exon 1.6h (A:66-104 | B:66-106 | C:66-106 | D...)
View:
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All Exon Boundaries
1: Boundary 1.4d/1.4j
2: Boundary 1.4j/1.5b
3: Boundary 1.5b/1.6h
4: Boundary 1.6h/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000233668
3a
ENSE00001254734
chr2:
74781213-74781941
729
DOK1_HUMAN
1-20
20
0
-
-
1.4d
ENST00000233668
4d
ENSE00001732324
chr2:
74782281-74782580
300
DOK1_HUMAN
21-120
100
0
-
-
1.4j
ENST00000233668
4j
ENSE00001701285
chr2:
74782702-74782795
94
DOK1_HUMAN
121-152
32
1
A:2-4 (gaps)
-
-
-
5
-
-
-
1.5b
ENST00000233668
5b
ENSE00001742360
chr2:
74783021-74783205
185
DOK1_HUMAN
152-213
62
4
A:4-65 (gaps)
B:5-65
C:5-65
D:5-65
62
61
61
61
1.6h
ENST00000233668
6h
ENSE00001872726
chr2:
74783435-74784681
1247
DOK1_HUMAN
214-481
268
4
A:66-104
B:66-106
C:66-106
D:66-103
39
41
41
38
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2v76a_ (A:)
1b: SCOP_d2v76b_ (B:)
1c: SCOP_d2v76c_ (C:)
1d: SCOP_d2v76d_ (D:)
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(
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Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Phosphotyrosine-binding domain (PTB)
(31)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2v76a_
A:
1b
d2v76b_
B:
1c
d2v76c_
C:
1d
d2v76d_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_IRS_2v76D01 (D:5-103)
1b: PFAM_IRS_2v76D02 (D:5-103)
1c: PFAM_IRS_2v76D03 (D:5-103)
1d: PFAM_IRS_2v76D04 (D:5-103)
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Clan
:
no clan defined [family: IRS]
(14)
Family
:
IRS
(14)
Homo sapiens (Human)
(5)
1a
IRS-2v76D01
D:5-103
1b
IRS-2v76D02
D:5-103
1c
IRS-2v76D03
D:5-103
1d
IRS-2v76D04
D:5-103
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Asym.Unit (156 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
Biol.Unit 2 (40 KB)
Header - Biol.Unit 2
Biol.Unit 3 (39 KB)
Header - Biol.Unit 3
Biol.Unit 4 (39 KB)
Header - Biol.Unit 4
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