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2V70
Asym. Unit
Info
Asym.Unit (136 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (35 KB)
Biol.Unit 3 (34 KB)
Biol.Unit 4 (35 KB)
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(1)
Title
:
THIRD LRR DOMAIN OF HUMAN SLIT2
Authors
:
C. Morlot, S. Cusack, A. A. Mccarthy
Date
:
24 Jul 07 (Deposition) - 28 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.01
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Neurogenesis, Glycoprotein, Slit2, Secreted, Chemotaxis, Lrr Domain, Structural Protein, Differentiation, Egf-Like Domain, Leucine-Rich Repeat, Developmental Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. Morlot, W. Hemrika, R. A. Romijn, P. Gros, S. Cusack, A. A. Mccarthy
Production Of Slit2 Lrr Domains In Mammalian Cells For Structural Studies And The Structure Of Human Slit2 Domain 3.
Acta Crystallogr. , Sect. D V. 63 961 2007
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:623 , ASP C:713
BINDING SITE FOR RESIDUE NAG A1715
2
AC2
SOFTWARE
ASN B:623
BINDING SITE FOR RESIDUE NAG B1715
3
AC3
SOFTWARE
ASP A:713 , ASN C:623
BINDING SITE FOR RESIDUE NAG C1715
4
AC4
SOFTWARE
ASN D:623
BINDING SITE FOR RESIDUE NAG D1715
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_018098 (S636P, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018098
S
636
P
SLIT2_HUMAN
Polymorphism
---
A/B/C/D
S
636
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: LRR (-|-|-|-|-|-|-|-|-|-|-|-|A:559-580,...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
SLIT2_HUMAN
56-77
80-101
104-125
128-149
152-173
176-197
200-221
301-322
325-346
349-370
373-394
397-418
559-580
607-628
631-652
655-676
778-799
755-777
802-823
826-847
16
-
-
-
-
-
-
-
-
-
-
-
-
A:559-580
B:559-580
C:559-580
D:559-580
A:607-628
B:607-628
C:607-628
D:607-628
A:631-652
B:631-652
C:631-652
D:631-652
A:655-676
B:655-676
C:655-676
D:655-676
-
-
-
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2v70a_ (A:)
1b: SCOP_d2v70b_ (B:)
1c: SCOP_d2v70c_ (C:)
1d: SCOP_d2v70d_ (D:)
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Classes
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(
)
Superfamilies
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)
(
)
Families
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d2v70a_
A:
1b
d2v70b_
B:
1c
d2v70c_
C:
1d
d2v70d_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(4, 16)
Info
all PFAM domains
1a: PFAM_LRR_1_2v70D01 (D:559-581)
1b: PFAM_LRR_1_2v70D02 (D:559-581)
1c: PFAM_LRR_1_2v70D03 (D:559-581)
1d: PFAM_LRR_1_2v70D04 (D:559-581)
2a: PFAM_LRR_8_2v70D05 (D:606-666)
2b: PFAM_LRR_8_2v70D06 (D:606-666)
2c: PFAM_LRR_8_2v70D07 (D:606-666)
2d: PFAM_LRR_8_2v70D08 (D:606-666)
3a: PFAM_LRRCT_2v70D09 (D:688-713)
3b: PFAM_LRRCT_2v70D10 (D:688-713)
3c: PFAM_LRRCT_2v70D11 (D:688-713)
3d: PFAM_LRRCT_2v70D12 (D:688-713)
4a: PFAM_LRRNT_2v70D13 (D:505-532)
4b: PFAM_LRRNT_2v70D14 (D:505-532)
4c: PFAM_LRRNT_2v70D15 (D:505-532)
4d: PFAM_LRRNT_2v70D16 (D:505-532)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
LRR
(77)
Family
:
LRR_1
(20)
Homo sapiens (Human)
(13)
1a
LRR_1-2v70D01
D:559-581
1b
LRR_1-2v70D02
D:559-581
1c
LRR_1-2v70D03
D:559-581
1d
LRR_1-2v70D04
D:559-581
Family
:
LRR_8
(41)
Homo sapiens (Human)
(24)
2a
LRR_8-2v70D05
D:606-666
2b
LRR_8-2v70D06
D:606-666
2c
LRR_8-2v70D07
D:606-666
2d
LRR_8-2v70D08
D:606-666
Clan
:
no clan defined [family: LRRCT]
(5)
Family
:
LRRCT
(5)
Homo sapiens (Human)
(4)
3a
LRRCT-2v70D09
D:688-713
3b
LRRCT-2v70D10
D:688-713
3c
LRRCT-2v70D11
D:688-713
3d
LRRCT-2v70D12
D:688-713
Clan
:
no clan defined [family: LRRNT]
(22)
Family
:
LRRNT
(22)
Homo sapiens (Human)
(15)
4a
LRRNT-2v70D13
D:505-532
4b
LRRNT-2v70D14
D:505-532
4c
LRRNT-2v70D15
D:505-532
4d
LRRNT-2v70D16
D:505-532
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Asym.Unit (136 KB)
Header - Asym.Unit
Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
Biol.Unit 3 (34 KB)
Header - Biol.Unit 3
Biol.Unit 4 (35 KB)
Header - Biol.Unit 4
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