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2V6N
Asym. Unit
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Asym.Unit (63 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF THE SARS-CORONAVIRUS MAIN PROTEINASE INACTIVATED BY BENZOTRIAZOLE COMPOUNDS
Authors
:
K. H. G. Verschueren, K. Pumpor, S. Anemueller, J. R. Mesters, R. Hilge
Date
:
19 Jul 07 (Deposition) - 01 Jul 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Thiol Protease, Rna Replication, Main Proteinase, Ribosomal Frameshift, Sars, Protease, Hydrolase, Polyprotein, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. H. G. Verschueren, K. Pumpor, S. Anemueller, S. Chen, J. R. Mesters, R. Hilgenfeld
A Structural View Of The Inactivation Of The Sars Coronavirus Main Proteinase By Benzotriazole Esters.
Chem. Biol. V. 15 597 2008
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
2a: SULFATE ION (SO4a)
3a: 4-(DIMETHYLAMINO)BENZOIC ACID (XP1a)
View:
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No.
Name
Count
Type
Full Name
1
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2
SO4
1
Ligand/Ion
SULFATE ION
3
XP1
1
Ligand/Ion
4-(DIMETHYLAMINO)BENZOIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:39 , HIS A:41 , MET A:49 , CYS A:145 , HIS A:164 , MET A:165 , ASP A:187 , ARG A:188
BINDING SITE FOR RESIDUE XP1 A2307
2
AC2
SOFTWARE
ARG A:105 , HIS A:134 , PHE A:181 , TYR A:182 , GLY A:183 , HOH A:1221 , HOH A:1359 , HOH A:1360
BINDING SITE FOR RESIDUE MES A2308
3
AC3
SOFTWARE
ASN A:53 , ASP A:56 , ARG A:222 , PHE A:223 , HOH A:1361
BINDING SITE FOR RESIDUE SO4 A2309
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_R1AB_CVHSA_047 (Q189P, chain A, )
2: VAR_R1AB_CVHSA_048 (D248E, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_R1AB_CVHSA_047
*
Q
3429
P
R1AB_CVHSA
---
---
A
Q
189
P
2
UniProt
VAR_R1AB_CVHSA_048
*
D
3488
E
R1AB_CVHSA
---
---
A
D
248
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: M_PRO (A:1-306)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
M_PRO
PS51442
Coronavirus main protease (M-pro) domain profile.
R1AB_CVHSA
3241-3546
1
A:1-306
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2v6na_ (A:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Viral cysteine protease of trypsin fold
(145)
Protein domain
:
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)
(75)
SARS coronavirus [TaxId: 227859]
(65)
1a
d2v6na_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Peptidase_C30_2v6nA01 (A:29-306)
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(
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Clan
:
Peptidase_PA
(797)
Family
:
Peptidase_C30
(30)
Human SARS coronavirus (SARS-CoV) (Severe acute respiratory syndrome coronavirus)
(24)
1a
Peptidase_C30-2v6nA01
A:29-306
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Chain A
Asymmetric Unit 1
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Asym.Unit (63 KB)
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