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2V6B
Asym. Unit
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Asym.Unit (171 KB)
Biol.Unit 1 (169 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LACTATE DEHYDROGENASE FROM DEINOCOCCUS RADIODURANS (APO FORM)
Authors
:
N. Coquelle, E. Fioravanti, M. Weik, F. Vellieux
Date
:
16 Jul 07 (Deposition) - 25 Sep 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase, Radioresistance, Lactate Dehydrogenase, Ldh, Nad, Cytoplasm, Mesophilic, Glycolysis
(Keyword Search:
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Reference
:
N. Coquelle, E. Fioravanti, M. Weik, F. Vellieux, D. Madern
Activity, Stability And Structural Studies Of Lactate Dehydrogenases Adapted To Extreme Thermal Environments.
J. Mol. Biol. V. 374 547 2007
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Hetero Components
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 4)
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1: L_LDH (A:192-198,B:192-198,C:192-198,D:19...)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
L_LDH
PS00064
L-lactate dehydrogenase active site.
LDH_DEIRA
167-173
4
A:192-198
B:192-198
C:192-198
D:192-198
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2v6ba2 (A:165-324)
1b: SCOP_d2v6bb2 (B:165-326)
1c: SCOP_d2v6bc2 (C:165-326)
1d: SCOP_d2v6bd2 (D:165-325)
2a: SCOP_d2v6ba1 (A:22-164)
2b: SCOP_d2v6bb1 (B:22-164)
2c: SCOP_d2v6bc1 (C:22-164)
2d: SCOP_d2v6bd1 (D:22-164)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
automated matches
(38)
Protein domain
:
automated matches
(38)
Deinococcus radiodurans [TaxId: 1299]
(1)
1a
d2v6ba2
A:165-324
1b
d2v6bb2
B:165-326
1c
d2v6bc2
C:165-326
1d
d2v6bd2
D:165-325
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Deinococcus radiodurans [TaxId: 1299]
(1)
2a
d2v6ba1
A:22-164
2b
d2v6bb1
B:22-164
2c
d2v6bc1
C:22-164
2d
d2v6bd1
D:22-164
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2v6bB01 (B:22-164)
1b: CATH_2v6bC01 (C:22-164)
1c: CATH_2v6bD01 (D:22-164)
1d: CATH_2v6bA01 (A:22-164)
2a: CATH_2v6bC02 (C:165-326)
2b: CATH_2v6bB02 (B:165-326)
2c: CATH_2v6bA02 (A:165-324)
2d: CATH_2v6bD02 (D:165-325)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Deinococcus radiodurans. Organism_taxid: 1299.
(1)
1a
2v6bB01
B:22-164
1b
2v6bC01
C:22-164
1c
2v6bD01
D:22-164
1d
2v6bA01
A:22-164
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Deinococcus radiodurans. Organism_taxid: 1299.
(1)
2a
2v6bC02
C:165-326
2b
2v6bB02
B:165-326
2c
2v6bA02
A:165-324
2d
2v6bD02
D:165-325
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Ldh_1_C_2v6bD01 (D:165-325)
1b: PFAM_Ldh_1_C_2v6bD02 (D:165-325)
1c: PFAM_Ldh_1_C_2v6bD03 (D:165-325)
1d: PFAM_Ldh_1_C_2v6bD04 (D:165-325)
2a: PFAM_Ldh_1_N_2v6bD05 (D:22-163)
2b: PFAM_Ldh_1_N_2v6bD06 (D:22-163)
2c: PFAM_Ldh_1_N_2v6bD07 (D:22-163)
2d: PFAM_Ldh_1_N_2v6bD08 (D:22-163)
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Clan
:
LDH_C
(56)
Family
:
Ldh_1_C
(51)
Deinococcus radiodurans
(1)
1a
Ldh_1_C-2v6bD01
D:165-325
1b
Ldh_1_C-2v6bD02
D:165-325
1c
Ldh_1_C-2v6bD03
D:165-325
1d
Ldh_1_C-2v6bD04
D:165-325
Clan
:
NADP_Rossmann
(1239)
Family
:
Ldh_1_N
(51)
Deinococcus radiodurans
(1)
2a
Ldh_1_N-2v6bD05
D:22-163
2b
Ldh_1_N-2v6bD06
D:22-163
2c
Ldh_1_N-2v6bD07
D:22-163
2d
Ldh_1_N-2v6bD08
D:22-163
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Asym.Unit (171 KB)
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