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2V5P
Biol. Unit 1
Info
Asym.Unit (338 KB)
Biol.Unit 1 (167 KB)
Biol.Unit 2 (168 KB)
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(1)
Title
:
COMPLEX STRUCTURE OF HUMAN IGF2R DOMAINS 11-13 BOUND TO IGF-II
Authors
:
J. Brown, C. Delaine, O. J. Zaccheo, C. Siebold, R. J. Gilbert, G. Van Boxel, A. Denley, J. C. Wallace, A. B. Hassan, B. E. Forbes, E. Y. Jones
Date
:
06 Jul 07 (Deposition) - 11 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Receptor/Glycoprotein, Cation Independent Mannose 6-Phosphate, Membrane, Receptor, Lysosome, Transport, Beta Barrel, Phosphorylation, Fibronectin Type Ii, Insulin-Like Growth Factor, Receptor/Glycoprotein Complex, Polymorphism, Glycoprotein, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Brown, C. Delaine, O. J. Zaccheo, C. Siebold, R. J. Gilbert, G. Van Boxel, A. Denley, J. C. Wallace, A. B. Hassan, B. E. Forbes, E. Y. Jones
Structure And Functional Analysis Of The Igf-Ii/Igf2R Interaction
Embo J. V. 27 265 2008
[
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:1656 , ASN A:1738 , VAL A:1794
BINDING SITE FOR RESIDUE NAG A2991
2
AC2
SOFTWARE
SER A:1747 , PRO A:1749 , ASN A:1757
BINDING SITE FOR RESIDUE NAG A2992
3
AC3
SOFTWARE
ASN A:1816 , NAG A:2994
BINDING SITE FOR RESIDUE NAG A2993
4
AC4
SOFTWARE
NAG A:2993 , BMA A:2995
BINDING SITE FOR RESIDUE NAG A2994
5
AC5
SOFTWARE
NAG A:2994 , ASP B:1630
BINDING SITE FOR RESIDUE BMA A2995
6
AC8
SOFTWARE
NAG A:2994 , ASP B:1630
BINDING SITE FOR RESIDUE BMA A2995
[
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_021312 (G1619G, chain A, )
2: VAR_050430 (Q1696R, chain A, )
3: VAR_021313 (R1832H, chain A, )
4: VAR_021314 (G1860D, chain A, )
5: VAR_021315 (I1908M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021312
R
1619
G
MPRI_HUMAN
Polymorphism
629849
A
G
1619
G
2
UniProt
VAR_050430
Q
1696
R
MPRI_HUMAN
Polymorphism
11552587
A
Q
1696
R
3
UniProt
VAR_021313
R
1832
H
MPRI_HUMAN
Polymorphism
8191904
A
R
1832
H
4
UniProt
VAR_021314
G
1860
D
MPRI_HUMAN
Polymorphism
8191905
A
G
1860
D
5
UniProt
VAR_021315
I
1908
M
MPRI_HUMAN
Polymorphism
8191908
A
I
1908
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: INSULIN (D:46-60)
2: FN2_2 (A:1898-1944)
3: FN2_1 (A:1903-1942)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INSULIN
PS00262
Insulin family signature.
IGF2_HUMAN
70-84
1
-
D:46-60
2
FN2_2
PS51092
Fibronectin type-II collagen-binding domain profile.
MPRI_HUMAN
1898-1944
1
A:1898-1944
-
3
FN2_1
PS00023
Fibronectin type-II collagen-binding domain signature.
MPRI_HUMAN
1903-1942
1
A:1903-1942
-
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2v5pc1 (C:6-63)
1b: SCOP_d2v5pd1 (D:6-63)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Insulin-like
(117)
Superfamily
:
Insulin-like
(117)
Family
:
Insulin-like
(117)
Protein domain
:
Insulin-like growth factor
(19)
Human (Homo sapiens) [TaxId: 9606]
(19)
1a
d2v5pc1
C:6-63
1b
d2v5pd1
D:6-63
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(3, 14)
Info
all PFAM domains
1a: PFAM_Insulin_2v5pD01 (D:40-60)
1b: PFAM_Insulin_2v5pD02 (D:40-60)
1c: PFAM_Insulin_2v5pD03 (D:40-60)
1d: PFAM_Insulin_2v5pD04 (D:40-60)
2a: PFAM_CIMR_2v5pB01 (B:1946-1990)
2b: PFAM_CIMR_2v5pB02 (B:1946-1990)
2c: PFAM_CIMR_2v5pB03 (B:1946-1990)
2d: PFAM_CIMR_2v5pB04 (B:1946-1990)
2e: PFAM_CIMR_2v5pB05 (B:1946-1990)
2f: PFAM_CIMR_2v5pB06 (B:1946-1990)
2g: PFAM_CIMR_2v5pB07 (B:1946-1990)
2h: PFAM_CIMR_2v5pB08 (B:1946-1990)
3a: PFAM_fn2_2v5pB09 (B:1903-1942)
3b: PFAM_fn2_2v5pB10 (B:1903-1942)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Insulin
(93)
Family
:
Insulin
(92)
Homo sapiens (Human)
(79)
1a
Insulin-2v5pD01
D:40-60
1b
Insulin-2v5pD02
D:40-60
1c
Insulin-2v5pD03
D:40-60
1d
Insulin-2v5pD04
D:40-60
Clan
:
M6PR
(17)
Family
:
CIMR
(8)
Homo sapiens (Human)
(3)
2a
CIMR-2v5pB01
B:1946-1990
2b
CIMR-2v5pB02
B:1946-1990
2c
CIMR-2v5pB03
B:1946-1990
2d
CIMR-2v5pB04
B:1946-1990
2e
CIMR-2v5pB05
B:1946-1990
2f
CIMR-2v5pB06
B:1946-1990
2g
CIMR-2v5pB07
B:1946-1990
2h
CIMR-2v5pB08
B:1946-1990
Clan
:
no clan defined [family: fn2]
(6)
Family
:
fn2
(6)
Homo sapiens (Human)
(6)
3a
fn2-2v5pB09
B:1903-1942
3b
fn2-2v5pB10
B:1903-1942
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (338 KB)
Header - Asym.Unit
Biol.Unit 1 (167 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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